C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VI, alpha 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032572 Col6a4 10090 - 9:105989454-106096783 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000121963 Col6a4-001 105990461-106096783 protein_coding
  ENSMUST00000137847 Col6a4-004 106071143-106072409 processed_transcript
  ENSMUST00000149207 Col6a4-003 105989454-105998322 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121963ENSMUST00000149207
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121963 56.845±57.30 0.079±0.04 0.186±0.01 0.126±0.05 0.778±0.26 2.731±0.94 0.004±0.00 0.107±0.04 0.021±0.02 0.135±0.05 0.023±0.03 29.682±14.89 0.046±0.06 1.206±0.95
ENSMUST00000149207 0.072±0.00 N/A N/A 0.299±0.00 0.318±0.00 N/A N/A 0.113±0.04 0.013±0.00 N/A 0.047±0.00 10.902±0.00 0.072±0.06 1.806±0.45

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 IDA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0007155 IEA cell adhesion
GO:0043234 IDA protein complex
GO:0070208 IDA protein heterotrimerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079752 col6a6 collagen, type VI, alpha 6 protein_coding Danio_rerio

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