C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VI, alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121963 Col6a4-001 ENSMUSG00000032572 10090 - 9:105990461-106096783 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121963
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121963 56.845±57.30 0.079±0.04 0.186±0.01 0.126±0.05 0.778±0.26 2.731±0.94 0.004±0.00 0.107±0.04 0.021±0.02 0.135±0.05 0.023±0.03 29.682±14.89 0.046±0.06 1.206±0.95

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 IDA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0007155 IEA cell adhesion
GO:0043234 IDA protein complex
GO:0070208 IDA protein heterotrimerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000487147 COL6A4P1-001 unitary_pseudogene Homo_sapiens 0 2737
ENST00000504443 COL6A4P2-001 unitary_pseudogene Homo_sapiens 0 1616
ENST00000507516 COL6A4P2-002 processed_transcript Homo_sapiens 0 230
ENST00000508169 COL6A4P1-004 processed_transcript Homo_sapiens 0 388

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