C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: outer dense fiber of sperm tails 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032921 Odf4 10090 - 11:68921835-68927081 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038932 Odf4-001 68921835-68927049 protein_coding
  ENSMUST00000125134 Odf4-004 68922819-68927074 protein_coding
  ENSMUST00000130271 Odf4-003 68921836-68927081 nonsense_mediated_decay
  ENSMUST00000156828 Odf4-002 68921963-68926816 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038932ENSMUST00000125134ENSMUST00000130271ENSMUST00000156828
Transcript ID Adipose Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038932 N/A 0.015±0.00 0.127±0.00 0.076±0.00 0.142±0.02 N/A 0.095±0.05 0.055±0.00 0.040±0.00 0.090±0.00 28.234±15.95
ENSMUST00000125134 0.138±0.09 0.016±0.00 N/A 0.099±0.00 0.060±0.00 N/A 0.059±0.02 N/A 0.042±0.00 0.040±0.00 57.963±1.67
ENSMUST00000130271 0.054±0.00 N/A 1.060±0.07 0.164±0.07 0.242±0.00 N/A N/A N/A N/A N/A 117.358±53.51
ENSMUST00000156828 0.149±0.00 N/A 0.266±0.00 N/A 0.067±0.02 0.025±0.00 0.064±0.00 0.120±0.03 0.062±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088C CIL_00088C_0002 VISTA 11:68323475-68924174
CIL_0009AZ CIL_0009AZ_0002 VISTA 11:68337699-68940744

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001520 IDA outer dense fiber
GO:0003674 ND molecular_function
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0031514 IDA motile cilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000184650 ODF4 outer dense fiber of sperm tails 4 protein_coding Homo_sapiens

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