C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: seizure threshold 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033253 Szt2 10090 - 4:118362743-118409273 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075406 Szt2-001 118362743-118409273 protein_coding
  ENSMUST00000130058 Szt2-003 118363407-118365066 processed_transcript
  ENSMUST00000136737 Szt2-006 118389133-118389933 processed_transcript
  ENSMUST00000138386 Szt2-005 118372673-118373825 retained_intron
  ENSMUST00000138632 Szt2-004 118368753-118369639 retained_intron
  ENSMUST00000183402 Szt2-002 118362747-118374274 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075406ENSMUST00000183402
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075406 3.646±1.55 7.222±0.81 1.834±0.21 6.445±3.29 6.103±2.04 6.903±0.67 1.993±0.37 3.304±0.52 2.048±0.61 10.722±0.99 1.295±0.27 8.412±2.26 1.976±1.16 2.250±0.81
ENSMUST00000183402 4.369±1.07 7.442±0.80 3.410±0.00 4.479±1.44 6.512±1.09 7.813±0.41 2.130±0.17 4.213±0.23 2.163±0.65 10.265±0.03 1.089±0.14 9.585±1.09 1.834±0.13 1.625±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005777 IDA peroxisome
GO:0007417 IMP central nervous system development
GO:0009791 IMP post-embryonic development
GO:0021540 IEA corpus callosum morphogenesis
GO:0043473 IMP pigmentation
GO:0070062 IEA extracellular vesicular exosome
GO:1901668 IMP regulation of superoxide dismutase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077753 seizure threshold 2 homolog (mouse) protein_coding Danio_rerio
ENSG00000198198 SZT2 seizure threshold 2 homolog (mouse) protein_coding Homo_sapiens

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