C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: seizure threshold 2 homolog (mouse)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198198 SZT2 9606 + 1:43389882-43452650 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357658 SZT2-001 43389905-43410553 retained_intron
  ENST00000372450 SZT2-002 43389882-43406894 protein_coding
  ENST00000406439 SZT2-003 43389964-43412791 nonsense_mediated_decay
  ENST00000460536 SZT2-009 43445252-43452650 retained_intron
  ENST00000470139 SZT2-005 43420757-43429489 retained_intron
  ENST00000470897 SZT2-007 43437594-43438149 retained_intron
  ENST00000471177 SZT2-008 43438023-43439638 processed_transcript
  ENST00000478140 SZT2-006 43429842-43430697 retained_intron
  ENST00000562955 SZT2-004 43389969-43452633 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000460536ENST00000470139ENST00000478140ENST00000562955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000460536 N/A N/A 2.157±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.737±0.00 N/A N/A N/A
ENST00000478140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.385±0.00 N/A N/A N/A
ENST00000562955 2.415±0.00 3.602±0.00 1.135±0.00 1.626±1.19 1.913±0.99 1.255±0.20 0.961±0.69 1.610±0.00 0.956±0.00 1.217±0.14 1.449±1.01 1.375±0.02 1.496±0.61 4.605±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005B4 CIL_0005B4_0002 CGP 1:43383917-43452650
CIL_0005B5 CIL_0005B5_0002 CGP 1:43389882-43453989

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005777 ISS peroxisome
GO:0007417 ISS central nervous system development
GO:0009791 ISS post-embryonic development
GO:0021540 IMP corpus callosum morphogenesis
GO:0043473 IEA pigmentation
GO:0070062 IDA extracellular vesicular exosome
GO:1901668 ISS regulation of superoxide dismutase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077753 seizure threshold 2 homolog (mouse) protein_coding Danio_rerio
ENSMUSG00000033253 Szt2 seizure threshold 2 protein_coding Mus_musculus

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