C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tenascin XB
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033327 Tnxb 10090 + 17:34670535-34719815 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087399 Tnxb-001 34670535-34719815 protein_coding
  ENSMUST00000168533 Tnxb-002 34670535-34719627 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087399ENSMUST00000168533
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087399 15.648±8.70 12.979±0.19 29.727±7.94 11.265±5.41 11.304±7.52 2.397±0.96 1.123±0.12 0.270±0.20 6.312±1.97 1.956±0.37 7.103±2.66 0.907±1.23 0.357±0.17
ENSMUST00000168533 6.619±1.02 N/A 6.865±0.00 5.762±3.87 N/A 2.394±0.61 0.496±0.08 0.064±0.02 5.543±1.85 0.915±0.08 5.755±1.67 0.192±0.26 0.111±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005518 IDA collagen binding
GO:0005576 IDA extracellular region
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005583 IEA fibrillar collagen trimer
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0006629 IMP lipid metabolic process
GO:0006631 IMP fatty acid metabolic process
GO:0006641 IMP triglyceride metabolic process
GO:0007160 IMP cell-matrix adhesion
GO:0008201 IDA heparin binding
GO:0016337 IMP single organismal cell-cell adhesion
GO:0030198 IMP extracellular matrix organization
GO:0030199 IMP collagen fibril organization
GO:0031012 IEA extracellular matrix
GO:0032963 IEA collagen metabolic process
GO:0043206 IMP extracellular fibril organization
GO:0043506 IMP regulation of JUN kinase activity
GO:0048251 IEA elastic fiber assembly
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001760 TNXB tenascin XB protein_coding Danio_rerio
ENSG00000168477 TNXB tenascin XB protein_coding Homo_sapiens

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