C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tenascin XB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087399 Tnxb-001 ENSMUSG00000033327 10090 + 17:34670535-34719815 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087399
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087399 15.648±8.70 12.979±0.19 29.727±7.94 11.265±5.41 11.304±7.52 2.397±0.96 1.123±0.12 0.270±0.20 6.312±1.97 1.956±0.37 7.103±2.66 0.907±1.23 0.357±0.17

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005518 IDA collagen binding
GO:0005576 IDA extracellular region
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0006629 IMP lipid metabolic process
GO:0006631 IMP fatty acid metabolic process
GO:0006641 IMP triglyceride metabolic process
GO:0007160 IMP cell-matrix adhesion
GO:0008201 IDA heparin binding
GO:0016337 IMP single organismal cell-cell adhesion
GO:0030198 IMP extracellular matrix organization
GO:0030199 IMP collagen fibril organization
GO:0043206 IMP extracellular fibril organization
GO:0043506 IMP regulation of JUN kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375244 TNXB-001 protein_coding Homo_sapiens 0 4442
ENST00000375247 TNXB-201 protein_coding Homo_sapiens 0 3690
ENST00000383159 TNXB-001 protein_coding Homo_sapiens 0 4281
ENST00000383321 CYP21A2-001 protein_coding Homo_sapiens 0 261
ENST00000383322 CYP21A2-002 protein_coding Homo_sapiens 0 261
ENST00000404514 TNXB-006 retained_intron Homo_sapiens 0 2001
ENST00000412618 TNXB-001 protein_coding Homo_sapiens 0 4270
ENST00000418967 CYP21A2-002 protein_coding Homo_sapiens 0 261
ENST00000423417 TNXA-001 unprocessed_pseudogene Homo_sapiens 0 1181
ENST00000423622 TNXA-001 unprocessed_pseudogene Homo_sapiens 0 1181
ENST00000424713 TNXB-001 protein_coding Homo_sapiens 0 4276
ENST00000424718 TNXB-001 protein_coding Homo_sapiens 0 4276
ENST00000426348 TNXB-006 retained_intron Homo_sapiens 0 1984
ENST00000433037 TNXB-001 protein_coding Homo_sapiens 0 1188
ENST00000434026 CYP21A2-001 protein_coding Homo_sapiens 0 261
ENST00000435122 CYP21A2-001 protein_coding Homo_sapiens 0 261
ENST00000436607 CYP21A2-002 protein_coding Homo_sapiens 0 261
ENST00000440248 TNXB-001 protein_coding Homo_sapiens 0 4270
ENST00000448314 CYP21A2-002 protein_coding Homo_sapiens 0 261
ENST00000448478 CYP21A2-002 protein_coding Homo_sapiens 0 261
ENST00000448877 CYP21A2-001 protein_coding Homo_sapiens 0 261
ENST00000451159 TNXB-001 protein_coding Homo_sapiens 0 3690
ENST00000451343 TNXB-006 protein_coding Homo_sapiens 0 2001
ENST00000452386 CYP21A2-001 protein_coding Homo_sapiens 0 261
ENST00000452708 CYP21A2-001 protein_coding Homo_sapiens 0 261
ENST00000456152 CYP21A2-002 protein_coding Homo_sapiens 0 261
ENST00000460263 CYP21A2-006 retained_intron Homo_sapiens 0 261
ENST00000460385 TNXB-007 retained_intron Homo_sapiens 0 363
ENST00000460626 CYP21A2-006 retained_intron Homo_sapiens 0 261
ENST00000460689 CYP21A2-004 retained_intron Homo_sapiens 0 261
ENST00000464272 CYP21A2-005 retained_intron Homo_sapiens 0 261
ENST00000464376 TNXB-005 processed_transcript Homo_sapiens 0 2161
ENST00000466115 TNXB-007 retained_intron Homo_sapiens 0 363
ENST00000466302 CYP21A2-005 retained_intron Homo_sapiens 0 261
ENST00000467455 CYP21A2-007 retained_intron Homo_sapiens 0 261
ENST00000468185 CYP21A2-005 retained_intron Homo_sapiens 0 261
ENST00000468340 CYP21A2-007 retained_intron Homo_sapiens 0 261
ENST00000469136 TNXB-007 retained_intron Homo_sapiens 0 363
ENST00000469250 TNXB-005 processed_transcript Homo_sapiens 0 2156
ENST00000470187 CYP21A2-006 retained_intron Homo_sapiens 0 261
ENST00000471059 TNXB-005 processed_transcript Homo_sapiens 0 2172
ENST00000472130 CYP21A2-006 retained_intron Homo_sapiens 0 261
ENST00000472274 TNXB-006 retained_intron Homo_sapiens 0 1989
ENST00000473044 TNXB-002 retained_intron Homo_sapiens 0 1607
ENST00000473538 CYP21A2-004 retained_intron Homo_sapiens 0 261
ENST00000475986 TNXB-005 processed_transcript Homo_sapiens 0 2161
ENST00000477062 TNXB-006 retained_intron Homo_sapiens 0 1989
ENST00000477608 CYP21A2-007 retained_intron Homo_sapiens 0 261
ENST00000479074 CYP21A2-004 retained_intron Homo_sapiens 0 261
ENST00000479730 CYP21A2-006 retained_intron Homo_sapiens 0 261
ENST00000479795 TNXB-007 protein_coding Homo_sapiens 0 1958
ENST00000486063 CYP21A2-005 retained_intron Homo_sapiens 0 261
ENST00000486148 TNXB-002 retained_intron Homo_sapiens 0 1607
ENST00000487592 CYP21A2-004 retained_intron Homo_sapiens 0 261
ENST00000487885 TNXB-002 retained_intron Homo_sapiens 0 1607
ENST00000488124 TNXB-006 retained_intron Homo_sapiens 0 2001
ENST00000488162 TNXB-002 retained_intron Homo_sapiens 0 1607
ENST00000488475 TNXB-007 retained_intron Homo_sapiens 0 363
ENST00000489006 TNXB-005 processed_transcript Homo_sapiens 0 2172
ENST00000489576 CYP21A2-004 retained_intron Homo_sapiens 0 261
ENST00000490077 TNXB-005 retained_intron Homo_sapiens 0 2172
ENST00000492024 CYP21A2-006 retained_intron Homo_sapiens 0 261
ENST00000493137 CYP21A2-005 retained_intron Homo_sapiens 0 261
ENST00000493848 CYP21A2-007 retained_intron Homo_sapiens 0 261
ENST00000494168 CYP21A2-004 retained_intron Homo_sapiens 0 261
ENST00000495543 TNXB-002 retained_intron Homo_sapiens 0 1607
ENST00000495919 CYP21A2-007 retained_intron Homo_sapiens 0 261
ENST00000496456 TNXB-007 retained_intron Homo_sapiens 0 357
ENST00000496483 CYP21A2-005 retained_intron Homo_sapiens 0 261
ENST00000498094 TNXB-004 retained_intron Homo_sapiens 0 363
ENST00000507684 TNXA-001 unprocessed_pseudogene Homo_sapiens 0 1186
ENST00000515427 TNXA-001 unprocessed_pseudogene Homo_sapiens 0 1170
ENST00000546684 TNXB-208 protein_coding Homo_sapiens 0 2047
ENST00000548649 TNXB-204 protein_coding Homo_sapiens 0 4458
ENST00000549232 TNXB-207 protein_coding Homo_sapiens 0 4464
ENST00000550212 TNXB-206 protein_coding Homo_sapiens 0 4453
ENST00000550539 TNXB-205 protein_coding Homo_sapiens 0 2307
ENST00000611016 TNXB-202 protein_coding Homo_sapiens 0 4464
ENST00000613214 TNXB-203 protein_coding Homo_sapiens 0 1853

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