C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tenascin XB
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168477 TNXB 9606 - 6:32041154-32115334 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375244 TNXB-001 32041154-32109374 protein_coding
  ENST00000375247 TNXB-201 32065081-32098198 protein_coding
  ENST00000442721 TNXB-003 32098176-32115334 protein_coding
  ENST00000451343 TNXB-006 32041155-32046128 protein_coding
  ENST00000479795 TNXB-007 32093214-32109313 protein_coding
  ENST00000486148 TNXB-002 32095579-32109221 retained_intron
  ENST00000490077 TNXB-005 32041155-32046607 retained_intron
  ENST00000498094 TNXB-004 32042266-32043452 retained_intron
  ENST00000611016 TNXB-202 32041155-32062484 protein_coding
  ENST00000613214 TNXB-203 32065081-32098198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375244ENST00000375247ENST00000479795ENST00000611016
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375244 12.031±0.00 8.277±0.00 0.357±0.00 1.762±0.00 22.584±0.00 7.240±3.35 4.635±4.19 1.288±0.93 4.217±0.00 9.892±0.00 2.555±0.00 25.276±25.22 5.859±1.25 2.747±0.37
ENST00000375247 N/A N/A 0.915±0.00 N/A N/A N/A 1.136±0.00 0.734±0.00 4.805±0.00 3.941±0.00 N/A N/A N/A N/A
ENST00000479795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.124±0.00 N/A N/A N/A
ENST00000611016 12.146±0.00 14.007±0.00 N/A N/A 40.856±0.00 21.346±0.00 4.626±0.00 N/A N/A 18.350±0.00 3.331±0.00 41.328±0.00 6.885±1.35 6.047±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000424 CIL_000424_0001 CGP 6:32014762-32041670

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005178 ISS integrin binding
GO:0005515 IEA protein binding
GO:0005518 IEA collagen binding
GO:0005576 IEA extracellular region
GO:0005578 NAS proteinaceous extracellular matrix
GO:0005583 IDA fibrillar collagen trimer
GO:0005615 IDA extracellular space
GO:0005622 IDA intracellular
GO:0006629 IEA lipid metabolic process
GO:0006631 IEA fatty acid metabolic process
GO:0006641 IEA triglyceride metabolic process
GO:0007155 ISS cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0008201 ISS heparin binding
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030036 ISS actin cytoskeleton organization
GO:0030198 IEA extracellular matrix organization
GO:0030199 IEA collagen fibril organization
GO:0031012 IDA extracellular matrix
GO:0032963 IMP collagen metabolic process
GO:0043206 IEA extracellular fibril organization
GO:0043506 IEA regulation of JUN kinase activity
GO:0048251 IMP elastic fiber assembly
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001760 TNXB tenascin XB protein_coding Danio_rerio
ENSMUSG00000033327 Tnxb tenascin XB protein_coding Mus_musculus

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