C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: expressed sequence AW554918
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033632 AW554918 10090 + 18:25168999-25467321 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036619 AW554918-003 25169010-25467316 protein_coding
  ENSMUST00000097643 AW554918-201 25169020-25467321 protein_coding
  ENSMUST00000100131 AW554918-006 25233914-25464092 protein_coding
  ENSMUST00000159605 AW554918-004 25168999-25463725 nonsense_mediated_decay
  ENSMUST00000160530 AW554918-005 25169023-25463896 nonsense_mediated_decay
  ENSMUST00000161262 AW554918-001 25169014-25189233 processed_transcript
  ENSMUST00000162149 AW554918-002 25169020-25290908 processed_transcript
  ENSMUST00000165400 AW554918-202 25169020-25467321 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036619ENSMUST00000097643ENSMUST00000160530ENSMUST00000161262ENSMUST00000165400
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036619 N/A N/A N/A N/A 0.956±0.00 N/A N/A N/A 0.993±0.17 0.349±0.08 1.839±0.32 0.356±0.00 9.589±0.00
ENSMUST00000097643 0.663±0.00 2.386±0.03 2.217±0.80 N/A N/A 0.679±0.36 N/A 1.060±0.38 N/A 0.691±0.13 2.638±0.73 1.252±0.52 2.715±0.00
ENSMUST00000160530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.607±0.00
ENSMUST00000161262 N/A N/A N/A N/A N/A 1.940±0.07 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165400 N/A N/A N/A 0.677±0.00 N/A N/A 0.812±0.00 N/A 1.084±0.00 N/A N/A 0.454±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VO CIL_0003VO_0002 CGP 18:24709445-25169007
CIL_0008E2 CIL_0008E2_0002 VISTA 18:24940595-25541640
CIL_00092R CIL_00092R_0002 VISTA 18:25077370-25678646
CIL_0002FL CIL_0002FL_0003 CGP 18:25127223-25467321
CIL_0002FC CIL_0002FC_0003 CGP 18:25168999-25753983

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070040 zgc:162344 zgc:162344 protein_coding Danio_rerio
ENSG00000150477 KIAA1328 KIAA1328 protein_coding Homo_sapiens

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