C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation factor A (SII) 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033813 Tcea1 10090 + 1:4857814-4897909 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000081551 Tcea1-001 4857814-4897905 protein_coding
  ENSMUST00000165720 Tcea1-002 4858038-4897909 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081551ENSMUST00000165720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081551 16.503±4.03 12.001±1.24 30.064±2.49 31.209±5.71 14.274±1.77 11.733±1.80 8.892±0.77 16.670±2.34 24.820±13.97 17.927±2.24 9.422±0.63 16.326±12.53 32.005±11.54 11.084±8.56
ENSMUST00000165720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.901±0.35 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TN CIL_0008TN_0002 VISTA 1:4721600-5324300
CIL_00053V CIL_00053V_0002 CGP 1:4773206-4886770

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 IDA nucleoplasm
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0030218 IMP erythrocyte differentiation
GO:0032784 IEA regulation of DNA-templated transcription, elongation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003531 tcea1 transcription elongation factor A (SII), 1 protein_coding Danio_rerio
ENSG00000187735 TCEA1 transcription elongation factor A (SII), 1 protein_coding Homo_sapiens

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