C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation factor A (SII), 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187735 TCEA1 9606 - 8:53966552-54022529 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000396401 TCEA1-013 53966552-54022448 protein_coding
  ENST00000517351 TCEA1-004 53993695-54022310 processed_transcript
  ENST00000518310 TCEA1-009 53993657-54022314 nonsense_mediated_decay
  ENST00000518784 TCEA1-010 53999625-54022159 protein_coding
  ENST00000519704 TCEA1-008 54000010-54022326 nonsense_mediated_decay
  ENST00000520534 TCEA1-011 53993376-54022148 protein_coding
  ENST00000521086 TCEA1-001 53966560-54022265 processed_transcript
  ENST00000521604 TCEA1-002 53966556-54022529 protein_coding
  ENST00000521836 TCEA1-005 53993704-54021929 processed_transcript
  ENST00000522397 TCEA1-006 53970264-54022448 processed_transcript
  ENST00000522635 TCEA1-003 53967170-54022269 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396401ENST00000521604ENST00000522397
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396401 N/A 2.872±0.00 N/A N/A 2.701±0.00 N/A N/A N/A N/A N/A N/A N/A 2.978±0.00 N/A
ENST00000521604 24.635±0.00 21.054±0.00 11.094±0.00 9.399±4.56 14.307±2.51 17.685±2.59 4.704±1.75 13.977±3.06 14.402±7.32 12.261±3.33 2.419±0.00 16.147±4.58 16.603±4.51 20.484±0.00
ENST00000522397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.597±0.00 N/A 27.519±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TN CIL_0008TN_0001 VISTA 8:53576629-54178623

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003746 IEA translation elongation factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006414 IEA translational elongation
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0030218 IEA erythrocyte differentiation
GO:0032784 IEA regulation of DNA-templated transcription, elongation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003531 tcea1 transcription elongation factor A (SII), 1 protein_coding Danio_rerio
ENSMUSG00000033813 Tcea1 transcription elongation factor A (SII) 1 protein_coding Mus_musculus

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