C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation factor A (SII) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081551 Tcea1-001 ENSMUSG00000033813 10090 + 1:4857814-4897905 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081551
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081551 16.503±4.03 12.001±1.24 30.064±2.49 31.209±5.71 14.274±1.77 11.733±1.80 8.892±0.77 16.670±2.34 24.820±13.97 17.927±2.24 9.422±0.63 16.326±12.53 32.005±11.54 11.084±8.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TN CIL_0008TN_0002 VISTA 1:4721600-5324300
CIL_00053V CIL_00053V_0002 CGP 1:4773206-4886770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 IDA nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0030218 IMP erythrocyte differentiation
GO:0032784 IEA regulation of DNA-templated transcription, elongation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396401 TCEA1-013 protein_coding Homo_sapiens 0 1273
ENST00000420496 TCEA1P2-001 processed_pseudogene Homo_sapiens 0 1275
ENST00000443005 TCEA1P3-001 processed_pseudogene Homo_sapiens 0 721
ENST00000449716 TCEA1P1-001 processed_pseudogene Homo_sapiens 0 765
ENST00000517351 TCEA1-004 processed_transcript Homo_sapiens 0 278
ENST00000518310 TCEA1-009 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000518784 TCEA1-010 protein_coding Homo_sapiens 0 309
ENST00000520534 TCEA1-011 protein_coding Homo_sapiens 0 416
ENST00000521086 TCEA1-001 processed_transcript Homo_sapiens 0 1002
ENST00000521604 TCEA1-002 protein_coding Homo_sapiens 0 1450
ENST00000521836 TCEA1-005 processed_transcript Homo_sapiens 0 272
ENST00000522397 TCEA1-006 processed_transcript Homo_sapiens 0 592
ENST00000522635 TCEA1-003 protein_coding Homo_sapiens 0 510

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