C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 43
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034177 Rnf43 10090 + 11:87662722-87735539 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040089 Rnf43-002 87699897-87735539 protein_coding
  ENSMUST00000092800 Rnf43-001 87664274-87735539 protein_coding
  ENSMUST00000121782 Rnf43-010 87664549-87734540 protein_coding
  ENSMUST00000123658 Rnf43-008 87663087-87718459 processed_transcript
  ENSMUST00000124625 Rnf43-006 87729374-87731113 retained_intron
  ENSMUST00000134684 Rnf43-007 87662722-87729934 retained_intron
  ENSMUST00000150866 Rnf43-005 87733920-87734468 processed_transcript
  ENSMUST00000162740 Rnf43-009 87727426-87730526 retained_intron
  ENSMUST00000165679 Rnf43-201 87663087-87735538 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040089ENSMUST00000092800ENSMUST00000121782ENSMUST00000123658ENSMUST00000134684ENSMUST00000165679
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040089 0.018±0.01 N/A N/A N/A 0.475±0.05 N/A 0.045±0.02 N/A 1.138±0.00 N/A 0.143±0.06 N/A 0.234±0.17 0.253±0.06
ENSMUST00000092800 1.086±0.74 0.520±0.17 1.006±0.16 0.343±0.12 0.653±0.30 3.850±0.54 0.045±0.02 0.931±0.17 2.352±0.94 1.833±0.21 0.078±0.00 1.451±0.49 0.286±0.11 0.459±0.09
ENSMUST00000121782 0.433±0.39 1.892±0.34 N/A N/A 1.867±0.14 4.335±0.52 0.031±0.02 0.632±0.15 2.324±0.81 2.188±0.44 0.033±0.00 1.767±0.59 0.192±0.00 0.466±0.16
ENSMUST00000123658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A N/A N/A
ENSMUST00000134684 N/A N/A N/A 0.390±0.00 0.126±0.00 N/A 0.014±0.00 0.479±0.00 0.501±0.05 N/A 0.029±0.01 N/A 0.216±0.00 N/A
ENSMUST00000165679 0.523±0.10 N/A 0.341±0.00 N/A 0.976±0.00 1.348±0.19 N/A 0.338±0.00 1.009±0.55 1.221±0.00 0.041±0.00 0.605±0.09 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005109 IEA frizzled binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005887 ISS integral component of plasma membrane
GO:0008270 IEA zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030178 ISS negative regulation of Wnt signaling pathway
GO:0038018 ISS Wnt receptor catabolic process
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0072089 IMP stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000108375 RNF43 ring finger protein 43 protein_coding Homo_sapiens

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