C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 43
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092800 Rnf43-001 ENSMUSG00000034177 10090 + 11:87664274-87735539 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092800
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092800 1.086±0.74 0.520±0.17 1.006±0.16 0.343±0.12 0.653±0.30 3.850±0.54 0.045±0.02 0.931±0.17 2.352±0.94 1.833±0.21 0.078±0.00 1.451±0.49 0.286±0.11 0.459±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005887 ISS integral component of plasma membrane
GO:0008270 IEA zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030178 ISS negative regulation of Wnt signaling pathway
GO:0038018 ISS Wnt receptor catabolic process
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0072089 IMP stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000407977 RNF43-003 protein_coding Homo_sapiens 0 2523
ENST00000577625 RNF43-006 protein_coding Homo_sapiens 0 1899
ENST00000577716 RNF43-001 protein_coding Homo_sapiens 0 2422
ENST00000581868 RNF43-004 protein_coding Homo_sapiens 0 1857
ENST00000583753 RNF43-005 protein_coding Homo_sapiens 0 1810
ENST00000584437 RNF43-002 protein_coding Homo_sapiens 0 2523

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