C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor IIH, polypeptide 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034345 Gtf2h5 10090 + 17:6079786-6086517 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039487 Gtf2h5-001 6079786-6086517 protein_coding
  ENSMUST00000100955 Gtf2h5-002 6079930-6085132 protein_coding
  ENSMUST00000146035 Gtf2h5-003 6079837-6082339 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039487ENSMUST00000100955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039487 6.608±0.98 1.445±0.31 11.224±2.25 13.443±4.19 3.450±0.62 1.856±0.25 3.575±0.37 4.942±0.61 7.548±5.42 4.865±0.58 5.100±0.83 1.981±0.93 3.779±3.46 1.858±0.86
ENSMUST00000100955 14.458±6.49 4.130±1.11 12.038±0.69 18.008±7.31 9.254±4.69 4.924±1.20 11.191±1.22 16.324±3.72 12.436±4.72 7.630±1.12 21.841±1.96 11.330±8.23 22.091±6.17 6.029±1.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055L CIL_00055L_0002 CGP 17:6042196-6086517
CIL_0004W3 CIL_0004W3_0002 CGP 17:6079786-6251128

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000182 IDA rDNA binding
GO:0000439 IEA core TFIIH complex
GO:0005730 IDA nucleolus
GO:0006289 IMP nucleotide-excision repair
GO:0006294 IMP nucleotide-excision repair, preincision complex assembly
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006362 IDA transcription elongation from RNA polymerase I promoter
GO:0006364 IMP rRNA processing
GO:0071480 IMP cellular response to gamma radiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056099 gtf2h5 general transcription factor IIH, polypeptide 5 protein_coding Danio_rerio
ENSG00000272047 GTF2H5 general transcription factor IIH, polypeptide 5 protein_coding Homo_sapiens

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