C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004W3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000272047-ENSG00000130338 CGP 9606 6:158168352-158511828
GeneTranscriptPositionBiotype
ENSG00000130338 (TULP4)
tubby like protein 4 		ENST00000367094 (TULP4-002) 158312660-158508376 protein_coding
ENST00000367097 (TULP4-001) 158312488-158511828 protein_coding
ENST00000432358 (TULP4-005) 158282263-158312358 processed_transcript
ENST00000613390 (TULP4-004) 158461650-158498693 nonsense_mediated_decay
ENST00000613994 (TULP4-007) 158310364-158312363 processed_transcript
ENST00000616856 (TULP4-003) 158313445-158481538 retained_intron
ENST00000620026 (TULP4-006) 158232236-158312662 processed_transcript
ENSG00000188451 (SRP72P2)
signal recognition particle 72kDa pseudogene 2 		ENST00000344851 (SRP72P2-001) 158237336-158242797 processed_pseudogene
ENSG00000243373 (RN7SL173P)
RNA, 7SL, cytoplasmic 173, pseudogene 		ENST00000461853 (RN7SL173P-201) 158437797-158438088 misc_RNA
ENSG00000265803 (AL590703.1)
 ENST00000580588 (AL590703.1-201) 158174984-158175070 miRNA
ENSG00000272047 (GTF2H5)
general transcription factor IIH, polypeptide 5 		ENST00000607778 (GTF2H5-001) 158168352-158199344 protein_coding
ENSG00000274023 (RP11-732M18.4)
 ENST00000619713 (RP11-732M18.4-001) 158282841-158428379 sense_overlapping
CIL_0004W3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034345-ENSMUSG00000034377 CGP 10090 17:6079786-6251128
GeneTranscriptPositionBiotype
ENSMUSG00000034345 (Gtf2h5)
general transcription factor IIH, polypeptide 5 		ENSMUST00000039487 (Gtf2h5-001) 6079786-6086517 protein_coding
ENSMUST00000100955 (Gtf2h5-002) 6079930-6085132 protein_coding
ENSMUST00000146035 (Gtf2h5-003) 6079837-6082339 retained_intron
ENSMUSG00000034377 (Tulp4)
tubby like protein 4 		ENSMUST00000039655 (Tulp4-001) 6138148-6240628 protein_coding
ENSMUST00000126982 (Tulp4-009) 6107400-6122344 processed_transcript
ENSMUST00000137063 (Tulp4-008) 6232652-6251128 protein_coding
ENSMUST00000141059 (Tulp4-007) 6138148-6226841 retained_intron
ENSMUST00000142030 (Tulp4-010) 6106479-6206914 protein_coding
ENSMUST00000144124 (Tulp4-011) 6118294-6124710 processed_transcript
ENSMUST00000145340 (Tulp4-006) 6118294-6123263 processed_transcript
ENSMUST00000146758 (Tulp4-003) 6106858-6124835 processed_transcript
ENSMUST00000149756 (Tulp4-002) 6106891-6240628 protein_coding
ENSMUST00000149838 (Tulp4-004) 6106437-6138792 processed_transcript
ENSMUST00000151732 (Tulp4-012) 6106555-6121884 processed_transcript
ENSMUST00000152672 (Tulp4-005) 6106858-6138789 processed_transcript
ENSMUSG00000051639 (Gm5812)
predicted gene 5812 		ENSMUST00000061073 (Gm5812-001) 6121208-6122164 processed_pseudogene
ENSMUSG00000058542 (Gm15590)
predicted gene 15590 		ENSMUST00000078419 (Gm15590-001) 6131854-6132405 processed_pseudogene
ENSMUSG00000077789 (n-R5s26)
nuclear encoded rRNA 5S 26 		ENSMUST00000104601 (n-R5s26-201) 6147419-6147540 rRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004W3_0001ENSG00000130338ENST00000367094ENST00000367097ENST00000432358ENST00000613390ENST00000613994ENST00000616856ENST00000620026ENSG00000188451ENST00000344851ENSG00000243373ENST00000461853ENSG00000265803ENST00000580588ENSG00000272047ENST00000607778ENSG00000274023ENST00000619713CIL_0004W3_0002ENSMUSG00000034345ENSMUST00000039487ENSMUST00000100955ENSMUST00000146035ENSMUSG00000034377ENSMUST00000039655ENSMUST00000126982ENSMUST00000137063ENSMUST00000141059ENSMUST00000142030ENSMUST00000144124ENSMUST00000145340ENSMUST00000146758ENSMUST00000149756ENSMUST00000149838ENSMUST00000151732ENSMUST00000152672ENSMUSG00000051639ENSMUST00000061073ENSMUSG00000058542ENSMUST00000078419ENSMUSG00000077789ENSMUST00000104601
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004W3_0001ENSG00000130338ENST00000367094ENST00000367097ENSG00000188451ENST00000344851ENSG00000243373ENST00000461853ENSG00000265803ENST00000580588ENSG00000272047ENST00000607778ENSG00000274023ENST00000619713CIL_0004W3_0002ENSMUSG00000034345ENSMUST00000039487ENSMUST00000100955ENSMUSG00000034377ENSMUST00000039655ENSMUST00000137063ENSMUST00000146758ENSMUST00000149756ENSMUSG00000051639ENSMUST00000061073ENSMUSG00000058542ENSMUST00000078419ENSMUSG00000077789ENSMUST00000104601
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130338 ENST00000367094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.774±0.00 N/A N/A N/A
ENST00000367097 1.303±0.00 N/A N/A 5.731±0.47 1.667±0.00 0.865±0.20 0.571±0.11 1.261±0.00 1.369±0.99 1.144±0.00 1.321±0.55 2.608±1.28 0.274±0.11 0.868±0.00
ENST00000432358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188451 ENST00000344851 0.012±0.00 0.123±0.00 0.202±0.00 0.163±0.14 0.154±0.12 0.496±0.00 0.094±0.07 0.049±0.00 0.033±0.00 0.186±0.18 0.207±0.00 0.483±0.68 0.020±0.00 0.051±0.03
ENSG00000243373 ENST00000461853 N/A 0.175±0.00 N/A 0.520±0.00 0.338±0.08 0.054±0.00 0.056±0.00 0.236±0.00 0.314±0.00 0.055±0.00 N/A N/A N/A N/A
ENSG00000265803 ENST00000580588 N/A 1.737±0.00 N/A 0.881±0.00 N/A 0.268±0.00 1.395±0.00 N/A 0.279±0.00 1.729±0.00 N/A N/A N/A N/A
ENSG00000272047 ENST00000607778 2.222±0.00 2.437±0.00 0.440±0.00 3.041±1.29 1.940±1.63 1.529±1.31 0.945±0.59 1.156±0.85 0.908±0.04 0.647±0.37 1.353±0.50 2.270±0.92 1.400±0.17 3.475±1.35
ENSG00000274023 ENST00000619713 0.141±0.00 0.450±0.00 N/A 0.147±0.00 0.690±0.37 0.198±0.00 0.058±0.01 0.404±0.00 0.185±0.10 0.494±0.41 0.021±0.00 0.321±0.35 0.053±0.00 0.177±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034345 ENSMUST00000039487 6.608±0.98 1.445±0.31 11.224±2.25 13.443±4.19 3.450±0.62 1.856±0.25 3.575±0.37 4.942±0.61 7.548±5.42 4.865±0.58 5.100±0.83 1.981±0.93 3.779±3.46 1.858±0.86
ENSMUST00000100955 14.458±6.49 4.130±1.11 12.038±0.69 18.008±7.31 9.254±4.69 4.924±1.20 11.191±1.22 16.324±3.72 12.436±4.72 7.630±1.12 21.841±1.96 11.330±8.23 22.091±6.17 6.029±1.61
ENSMUST00000146035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034377 ENSMUST00000039655 2.275±0.31 N/A 13.172±9.50 11.857±7.10 1.895±0.00 2.831±0.41 1.815±0.00 3.102±0.50 0.687±0.58 4.097±0.00 8.687±0.39 3.615±2.12 3.130±1.09 12.924±0.14
ENSMUST00000126982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137063 N/A 11.612±1.49 N/A 24.899±0.00 10.854±2.45 8.891±1.29 N/A N/A N/A 11.861±3.06 N/A 16.173±3.60 13.474±0.00 31.608±0.00
ENSMUST00000141059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146758 N/A N/A N/A N/A N/A N/A N/A N/A 0.936±0.20 N/A N/A N/A N/A N/A
ENSMUST00000149756 7.773±1.89 6.644±1.52 23.379±10.82 25.134±12.33 8.364±1.77 7.009±1.67 6.514±0.31 7.861±2.26 1.921±1.25 12.017±2.44 8.146±1.29 11.083±4.23 8.424±3.24 13.855±6.03
ENSMUST00000149838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051639 ENSMUST00000061073 N/A N/A N/A N/A N/A N/A N/A N/A 12.509±8.75 N/A N/A 41.055±3.36 N/A N/A
ENSMUSG00000058542 ENSMUST00000078419 0.811±0.55 0.248±0.09 2.681±1.84 0.367±0.05 0.403±0.25 0.267±0.16 0.220±0.14 1.066±0.60 2.348±3.46 0.471±0.08 N/A 0.433±0.16 0.699±0.16 0.199±0.04
ENSMUSG00000077789 ENSMUST00000104601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.988±0.00 N/A N/A

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