C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polycystic kidney disease 1 like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034416 Pkd1l2 10090 - 8:116995679-117082449 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000098375 Pkd1l2-201 116995679-117082449 protein_coding
  ENSMUST00000109093 Pkd1l2-001 116995679-117082449 protein_coding
  ENSMUST00000160449 Pkd1l2-002 117023550-117028843 retained_intron
  ENSMUST00000162080 Pkd1l2-003 117009323-117024095 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098375ENSMUST00000109093ENSMUST00000160449ENSMUST00000162080
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098375 0.009±0.01 0.023±0.00 0.003±0.00 0.005±0.00 0.026±0.01 0.007±0.00 0.003±0.00 0.009±0.00 0.002±0.00 0.005±0.00 0.004±0.00 0.038±0.02 0.040±0.05 0.056±0.00
ENSMUST00000109093 0.009±0.01 N/A 0.003±0.00 0.005±0.00 0.026±0.01 0.007±0.00 0.003±0.00 0.008±0.00 0.002±0.00 0.005±0.00 0.004±0.00 0.038±0.02 0.014±0.01 0.056±0.00
ENSMUST00000160449 0.028±0.00 0.220±0.05 N/A N/A 0.057±0.00 N/A N/A N/A 0.012±0.00 0.014±0.00 0.063±0.00 N/A 0.120±0.00 N/A
ENSMUST00000162080 0.036±0.02 0.359±0.11 N/A 0.019±0.00 0.132±0.07 0.045±0.03 0.016±0.00 0.016±0.00 0.003±0.00 0.036±0.02 0.042±0.00 0.137±0.07 0.127±0.05 0.416±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043F CIL_00043F_0002 CGP 8:116981810-117082449

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005262 IBA calcium channel activity
GO:0005509 IEA calcium ion binding
GO:0007218 IEA neuropeptide signaling pathway
GO:0016020 IBA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0050982 IBA detection of mechanical stimulus
GO:0070588 IBA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074116 protein_coding Danio_rerio
ENSDARG00000090210 protein_coding Danio_rerio
ENSG00000279890 PKD1L2 polycystic kidney disease protein 1-like 2 isoform d protein_coding Homo_sapiens

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