C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycystic kidney disease 1 like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098375 Pkd1l2-201 ENSMUSG00000034416 10090 - 8:116995679-117082449 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098375 0.009±0.01 0.023±0.00 0.003±0.00 0.005±0.00 0.026±0.01 0.007±0.00 0.003±0.00 0.009±0.00 0.002±0.00 0.005±0.00 0.004±0.00 0.038±0.02 0.040±0.05 0.056±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043F CIL_00043F_0002 CGP 8:116981810-117082449

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005262 IBA calcium channel activity
GO:0005509 IEA calcium ion binding
GO:0007218 IEA neuropeptide signaling pathway
GO:0016020 IBA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0050982 IBA detection of mechanical stimulus
GO:0070588 IBA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299598 PKD1L2-003 retained_intron Homo_sapiens 0 2272
ENST00000337114 PKD1L2-201 protein_coding Homo_sapiens 0 1749
ENST00000525539 PKD1L2-001 polymorphic_pseudogene Homo_sapiens 0 5446
ENST00000533478 PKD1L2-004 polymorphic_pseudogene Homo_sapiens 0 4204
ENST00000614230 PKD1L2-202 protein_coding Homo_sapiens 0 5445
ENST00000623790 PKD1L2-204 protein_coding Homo_sapiens 0 4150

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