C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00043F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140905-ENSG00000279362 CGP 9606 16:81081961-81181213
GeneTranscriptPositionBiotype
ENSG00000140905 (GCSH)
glycine cleavage system protein H (aminomethyl carrier) 		ENST00000315467 (GCSH-001) 81081961-81096403 protein_coding
ENST00000561801 (GCSH-005) 81082823-81096257 nonsense_mediated_decay
ENST00000564386 (GCSH-002) 81082336-81096262 nonsense_mediated_decay
ENST00000564477 (GCSH-003) 81084246-81096318 nonsense_mediated_decay
ENST00000566566 (GCSH-004) 81084316-81096299 protein_coding
ENST00000569885 (GCSH-006) 81082509-81096240 protein_coding
ENSG00000166473 (PKD1L2)
polycystic kidney disease 1-like 2 		ENST00000299598 (PKD1L2-003) 81130081-81188998 retained_intron
ENST00000337114 (PKD1L2-201) 81170289-81220370 protein_coding
ENST00000525539 (PKD1L2-001) 81101123-81220370 polymorphic_pseudogene
ENST00000526632 (PKD1L2-005) 81170292-81198786 protein_coding
ENST00000527937 (PKD1L2-007) 81171215-81181327 protein_coding
ENST00000529079 (PKD1L2-012) 81154130-81159988 retained_intron
ENST00000529791 (PKD1L2-011) 81174863-81181327 processed_transcript
ENST00000530363 (PKD1L2-008) 81123018-81141499 retained_intron
ENST00000531391 (PKD1L2-006) 81170289-81181329 protein_coding
ENST00000533478 (PKD1L2-004) 81100889-81181324 polymorphic_pseudogene
ENST00000534142 (PKD1L2-009) 81100879-81136372 processed_transcript
ENST00000534447 (PKD1L2-010) 81100875-81113981 retained_intron
ENST00000614230 (PKD1L2-202) 81100879-81220370 protein_coding
ENSG00000260643 (RP11-303E16.8)
 ENST00000564536 (RP11-303E16.8-001) 81053665-81087651 processed_transcript
ENSG00000279362 (PKD1L2)
 ENST00000624382 (PKD1L2-203) 81170740-81181213 protein_coding
ENSG00000279890 (PKD1L2)
polycystic kidney disease protein 1-like 2 isoform d 		ENST00000623790 (PKD1L2-204) 81101123-81181213 protein_coding

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_00043F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034424-ENSMUSG00000034416 CGP 10090 8:116981810-117082449
GeneTranscriptPositionBiotype
ENSMUSG00000034416 (Pkd1l2)
polycystic kidney disease 1 like 2 		ENSMUST00000098375 (Pkd1l2-201) 116995679-117082449 protein_coding
ENSMUST00000109093 (Pkd1l2-001) 116995679-117082449 protein_coding
ENSMUST00000160449 (Pkd1l2-002) 117023550-117028843 retained_intron
ENSMUST00000162080 (Pkd1l2-003) 117009323-117024095 retained_intron
ENSMUSG00000034424 (Gcsh)
glycine cleavage system protein H (aminomethyl carrier) 		ENSMUST00000040484 (Gcsh-001) 116981810-116993537 protein_coding
ENSMUST00000162548 (Gcsh-002) 116983836-116991361 processed_transcript
ENSMUSG00000085688 (Gm15395)
predicted gene 15395 		ENSMUST00000153724 (Gm15395-001) 117036497-117043639 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043F_0001ENSG00000140905ENST00000315467ENST00000561801ENST00000564386ENST00000564477ENST00000566566ENST00000569885ENSG00000166473ENST00000299598ENST00000337114ENST00000525539ENST00000526632ENST00000527937ENST00000529079ENST00000529791ENST00000530363ENST00000531391ENST00000533478ENST00000534142ENST00000534447ENST00000614230ENSG00000260643ENST00000564536ENSG00000279362ENST00000624382ENSG00000279890ENST00000623790CIL_00043F_0002ENSMUSG00000034416ENSMUST00000098375ENSMUST00000109093ENSMUST00000160449ENSMUST00000162080ENSMUSG00000034424ENSMUST00000040484ENSMUST00000162548ENSMUSG00000085688ENSMUST00000153724
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043F_0001ENSG00000140905ENST00000315467ENST00000561801ENST00000564386ENST00000566566ENST00000569885ENSG00000166473ENST00000299598ENST00000337114ENST00000527937ENST00000529791ENST00000530363ENST00000531391ENST00000533478ENST00000534142ENST00000534447ENSG00000260643ENST00000564536ENSG00000279362ENST00000624382ENSG00000279890ENST00000623790CIL_00043F_0002ENSMUSG00000034416ENSMUST00000098375ENSMUST00000109093ENSMUST00000160449ENSMUST00000162080ENSMUSG00000034424ENSMUST00000040484ENSMUST00000162548ENSMUSG00000085688ENSMUST00000153724
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140905 ENST00000315467 N/A 1.798±0.00 2.955±0.00 9.516±0.18 4.603±1.03 1.281±0.00 2.805±0.31 11.718±4.04 4.582±2.87 1.111±0.00 4.371±0.45 3.656±1.80 5.359±2.06 4.423±0.00
ENST00000561801 N/A N/A N/A N/A N/A 4.860±0.00 N/A N/A N/A 2.672±0.00 N/A 33.694±0.00 73.841±0.00 15.703±0.00
ENST00000564386 2.633±0.00 6.507±0.00 2.106±0.00 15.277±0.00 10.815±0.00 2.487±1.22 5.742±0.00 8.973±1.77 21.809±0.00 1.137±0.28 3.113±0.00 8.643±4.93 17.188±1.88 8.285±0.00
ENST00000564477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566566 N/A 4.103±0.00 2.535±0.00 N/A N/A N/A N/A N/A 1.811±0.00 N/A N/A 18.508±0.00 21.248±13.29 6.661±0.00
ENST00000569885 N/A N/A N/A N/A N/A 2.904±0.00 N/A 7.103±0.00 N/A 1.530±0.00 4.652±0.00 7.843±0.00 18.002±0.00 N/A
ENSG00000166473 ENST00000299598 N/A 0.047±0.00 N/A 0.153±0.14 N/A N/A 0.215±0.00 N/A 0.047±0.00 N/A 0.015±0.00 0.095±0.06 0.070±0.00 0.110±0.00
ENST00000337114 N/A N/A N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527937 N/A 0.079±0.00 N/A 0.047±0.00 N/A 0.058±0.03 N/A 0.110±0.05 0.095±0.05 N/A 0.056±0.00 0.054±0.04 0.086±0.00 0.145±0.00
ENST00000529079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.098±0.94 0.816±0.00 N/A N/A
ENST00000530363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.211±0.00 N/A
ENST00000531391 N/A N/A N/A N/A 3.155±0.00 N/A 0.766±0.00 N/A N/A N/A N/A N/A 0.418±0.16 N/A
ENST00000533478 0.201±0.00 N/A N/A N/A 0.634±0.00 0.218±0.00 N/A N/A 0.202±0.00 N/A N/A 0.131±0.10 0.093±0.00 N/A
ENST00000534142 0.219±0.00 N/A N/A N/A N/A 0.246±0.00 0.291±0.00 N/A 0.245±0.00 0.334±0.00 N/A 0.391±0.33 0.214±0.04 0.243±0.00
ENST00000534447 0.149±0.00 0.174±0.00 N/A 0.368±0.00 0.250±0.11 0.214±0.00 0.185±0.00 0.165±0.00 0.089±0.00 0.154±0.00 0.064±0.00 0.088±0.02 0.057±0.01 0.237±0.00
ENST00000614230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260643 ENST00000564536 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.138±0.00 N/A N/A N/A 7.004±0.00
ENSG00000279362 ENST00000624382 N/A N/A N/A N/A 1.792±1.20 N/A N/A N/A 0.421±0.00 N/A N/A N/A 0.966±0.39 N/A
ENSG00000279890 ENST00000623790 N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034416 ENSMUST00000098375 0.009±0.01 0.023±0.00 0.003±0.00 0.005±0.00 0.026±0.01 0.007±0.00 0.003±0.00 0.009±0.00 0.002±0.00 0.005±0.00 0.004±0.00 0.038±0.02 0.040±0.05 0.056±0.00
ENSMUST00000109093 0.009±0.01 N/A 0.003±0.00 0.005±0.00 0.026±0.01 0.007±0.00 0.003±0.00 0.008±0.00 0.002±0.00 0.005±0.00 0.004±0.00 0.038±0.02 0.014±0.01 0.056±0.00
ENSMUST00000160449 0.028±0.00 0.220±0.05 N/A N/A 0.057±0.00 N/A N/A N/A 0.012±0.00 0.014±0.00 0.063±0.00 N/A 0.120±0.00 N/A
ENSMUST00000162080 0.036±0.02 0.359±0.11 N/A 0.019±0.00 0.132±0.07 0.045±0.03 0.016±0.00 0.016±0.00 0.003±0.00 0.036±0.02 0.042±0.00 0.137±0.07 0.127±0.05 0.416±0.12
ENSMUSG00000034424 ENSMUST00000040484 36.868±14.11 46.032±11.15 25.865±1.52 18.294±3.96 26.835±5.47 16.252±1.65 16.024±4.20 66.249±3.01 51.331±12.28 8.850±0.87 18.538±3.86 39.481±6.63 40.980±33.75 5.017±1.08
ENSMUST00000162548 N/A N/A N/A 43.030±0.00 N/A N/A N/A N/A N/A N/A N/A 72.545±0.00 43.254±32.45 24.146±0.00
ENSMUSG00000085688 ENSMUST00000153724 N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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