C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myosin VA
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034593 Myo5a 10090 + 9:75071015-75223688 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000123128 Myo5a-001 75071188-75223688 protein_coding
  ENSMUST00000123531 Myo5a-010 75071565-75176557 nonsense_mediated_decay
  ENSMUST00000129281 Myo5a-007 75185895-75196200 protein_coding
  ENSMUST00000130384 Myo5a-013 75185996-75201319 protein_coding
  ENSMUST00000136604 Myo5a-002 75184184-75218484 processed_transcript
  ENSMUST00000136731 Myo5a-009 75071600-75218953 protein_coding
  ENSMUST00000136871 Myo5a-006 75071206-75131008 retained_intron
  ENSMUST00000142181 Myo5a-008 75140699-75147297 retained_intron
  ENSMUST00000143355 Myo5a-014 75189939-75192992 retained_intron
  ENSMUST00000148144 Myo5a-011 75185994-75217993 protein_coding
  ENSMUST00000149032 Myo5a-012 75184247-75194100 retained_intron
  ENSMUST00000149823 Myo5a-005 75071015-75117308 retained_intron
  ENSMUST00000153404 Myo5a-004 75193773-75203752 retained_intron
  ENSMUST00000155282 Myo5a-003 75071386-75218550 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000123128ENSMUST00000123531ENSMUST00000129281ENSMUST00000136731ENSMUST00000148144ENSMUST00000149032ENSMUST00000155282
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123128 2.014±1.05 1.174±0.07 1.454±0.45 7.512±1.77 1.945±0.64 0.368±0.14 0.185±0.07 N/A 0.139±0.13 0.473±0.16 0.265±0.00 1.374±0.30 0.286±0.06 1.067±0.76
ENSMUST00000123531 N/A N/A N/A N/A N/A N/A 0.535±0.00 N/A 0.074±0.00 1.223±0.00 N/A N/A N/A N/A
ENSMUST00000129281 N/A N/A N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A N/A
ENSMUST00000136731 N/A N/A N/A 15.609±0.00 N/A N/A 0.255±0.02 1.326±0.02 0.159±0.00 N/A N/A 2.411±0.00 2.528±1.00 N/A
ENSMUST00000148144 N/A N/A N/A N/A N/A N/A N/A 7.920±1.75 0.104±0.04 N/A N/A N/A N/A N/A
ENSMUST00000149032 N/A N/A N/A N/A N/A N/A N/A N/A 0.343±0.00 N/A N/A N/A N/A N/A
ENSMUST00000155282 1.505±0.33 N/A 1.460±0.09 N/A N/A N/A N/A N/A 0.298±0.12 N/A 0.277±0.09 2.813±0.91 1.538±0.62 1.374±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YK CIL_0004YK_0002 CGP 9:75037614-75223688

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000146 IDA microfilament motor activity
GO:0001726 IEA ruffle
GO:0001750 IDA photoreceptor outer segment
GO:0003774 IDA motor activity
GO:0003779 IDA actin binding
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005516 IDA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005764 IEA lysosome
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005777 IEA peroxisome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005829 TAS cytosol
GO:0005882 IDA intermediate filament
GO:0005884 IEA actin filament
GO:0006582 IMP melanin metabolic process
GO:0006887 IMP exocytosis
GO:0006892 IEA post-Golgi vesicle-mediated transport
GO:0007268 IMP synaptic transmission
GO:0007601 IMP visual perception
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IMP vesicle-mediated transport
GO:0016459 IDA myosin complex
GO:0017137 IPI Rab GTPase binding
GO:0030048 IDA actin filament-based movement
GO:0030050 TAS vesicle transport along actin filament
GO:0030073 IMP insulin secretion
GO:0030141 IDA secretory granule
GO:0030318 IMP melanocyte differentiation
GO:0031585 IMP regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0031982 IEA vesicle
GO:0031987 IMP locomotion involved in locomotory behavior
GO:0032252 IMP secretory granule localization
GO:0032400 IMP melanosome localization
GO:0032402 IMP melanosome transport
GO:0032433 IEA filopodium tip
GO:0032593 IDA insulin-responsive compartment
GO:0032869 IMP cellular response to insulin stimulus
GO:0035371 IDA microtubule plus-end
GO:0042438 IMP melanin biosynthetic process
GO:0042470 IDA melanosome
GO:0042476 IDA odontogenesis
GO:0042552 IMP myelination
GO:0042641 IDA actomyosin
GO:0042759 IMP long-chain fatty acid biosynthetic process
GO:0043025 IDA neuronal cell body
GO:0043473 ISA pigmentation
GO:0044822 IEA poly(A) RNA binding
GO:0048066 IMP developmental pigmentation
GO:0050808 IMP synapse organization
GO:0051015 IEA actin filament binding
GO:0051643 IMP endoplasmic reticulum localization
GO:0055037 IEA recycling endosome
GO:0070062 IEA extracellular vesicular exosome
GO:0072659 IMP protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061635 myo5aa myosin VAa protein_coding Danio_rerio
ENSG00000197535 MYO5A myosin VA (heavy chain 12, myoxin) protein_coding Homo_sapiens

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