C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123128 Myo5a-001 ENSMUSG00000034593 10090 + 9:75071188-75223688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000123128
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123128 2.014±1.05 1.174±0.07 1.454±0.45 7.512±1.77 1.945±0.64 0.368±0.14 0.185±0.07 0.139±0.13 0.473±0.16 0.265±0.00 1.374±0.30 0.286±0.06 1.067±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YK CIL_0004YK_0002 CGP 9:75037614-75223688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000146 IDA microfilament motor activity
GO:0001726 IEA ruffle
GO:0001750 IDA photoreceptor outer segment
GO:0003774 IDA motor activity
GO:0003779 IDA actin binding
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005516 IDA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005764 IEA lysosome
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005777 IEA peroxisome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005829 TAS cytosol
GO:0005882 IDA intermediate filament
GO:0005884 IEA actin filament
GO:0006582 IMP melanin metabolic process
GO:0006887 IMP exocytosis
GO:0006892 IEA post-Golgi vesicle-mediated transport
GO:0007268 IMP synaptic transmission
GO:0007601 IMP visual perception
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IMP vesicle-mediated transport
GO:0016459 IDA myosin complex
GO:0017137 IPI Rab GTPase binding
GO:0030048 IDA actin filament-based movement
GO:0030050 TAS vesicle transport along actin filament
GO:0030073 IMP insulin secretion
GO:0030141 IDA secretory granule
GO:0030318 IMP melanocyte differentiation
GO:0031585 IMP regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0031982 IEA vesicle
GO:0031987 IMP locomotion involved in locomotory behavior
GO:0032252 IMP secretory granule localization
GO:0032400 IMP melanosome localization
GO:0032402 IMP melanosome transport
GO:0032433 IEA filopodium tip
GO:0032593 IDA insulin-responsive compartment
GO:0032869 IMP cellular response to insulin stimulus
GO:0035371 IDA microtubule plus-end
GO:0042438 IMP melanin biosynthetic process
GO:0042470 IDA melanosome
GO:0042476 IDA odontogenesis
GO:0042552 IMP myelination
GO:0042641 IDA actomyosin
GO:0042759 IMP long-chain fatty acid biosynthetic process
GO:0043025 IDA neuronal cell body
GO:0043473 ISA pigmentation
GO:0044822 IEA poly(A) RNA binding
GO:0048066 IMP developmental pigmentation
GO:0050808 IMP synapse organization
GO:0051643 IMP endoplasmic reticulum localization
GO:0055037 IEA recycling endosome
GO:0070062 IEA extracellular vesicular exosome
GO:0072659 IMP protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088037 myo5aa-201 protein_coding Danio_rerio 0 802
ENSDART00000133618 myo5aa-001 protein_coding Danio_rerio 0 732
ENSDART00000148541 myo5aa-003 protein_coding Danio_rerio 0 732
ENST00000356338 MYO5A-008 protein_coding Homo_sapiens 0 5579
ENST00000358212 MYO5A-201 protein_coding Homo_sapiens 0 5313
ENST00000399228 MYO5A-009 protein_coding Homo_sapiens 0 416
ENST00000399229 MYO5A-010 protein_coding Homo_sapiens 0 1735
ENST00000399231 MYO5A-001 protein_coding Homo_sapiens 0 5313
ENST00000399233 MYO5A-202 protein_coding Homo_sapiens 0 5280
ENST00000469611 MYO5A-004 retained_intron Homo_sapiens 0 595
ENST00000553916 MYO5A-007 protein_coding Homo_sapiens 0 7483
ENST00000556196 MYO5A-006 nonsense_mediated_decay Homo_sapiens 0 3703
ENST00000561810 MYO5A-011 retained_intron Homo_sapiens 0 416
ENST00000568914 MYO5A-003 protein_coding Homo_sapiens 0 470
ENST00000613858 MYO5A-203 protein_coding Homo_sapiens 0 5603

Loading