C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 2700049A03 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034601 2700049A03Rik 10090 + 12:71136848-71243303 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045907 2700049A03Rik-201 71136848-71243303 protein_coding
  ENSMUST00000129376 2700049A03Rik-002 71170589-71243299 protein_coding
  ENSMUST00000134748 2700049A03Rik-003 71150434-71154887 nonsense_mediated_decay
  ENSMUST00000149564 2700049A03Rik-001 71136848-71243303 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045907ENSMUST00000129376ENSMUST00000149564
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045907 0.687±0.23 0.844±0.08 0.461±0.00 1.005±0.54 0.764±0.20 0.697±0.02 0.198±0.01 0.288±0.08 0.288±0.13 0.426±0.24 0.396±0.12 1.002±0.40 0.567±0.38 N/A
ENSMUST00000129376 0.856±0.20 2.968±0.71 1.148±0.05 1.899±0.00 1.040±0.32 0.994±0.34 0.324±0.10 0.933±0.20 0.671±0.38 0.965±0.49 0.559±0.15 2.996±0.63 0.438±0.00 N/A
ENSMUST00000149564 0.475±0.09 0.618±0.16 0.998±0.00 1.415±1.05 0.389±0.11 0.571±0.13 0.336±0.06 0.521±0.14 1.021±0.74 0.753±0.22 0.183±0.06 1.248±0.56 1.473±0.87 13.086±4.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001K3 CIL_0001K3_0002 CGP 12:71123173-71243303
CIL_0001K6 CIL_0001K6_0002 CGP 12:71136848-71320107

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0007224 IEA smoothened signaling pathway
GO:0036064 ISO ciliary basal body
GO:0042384 ISO cilium assembly
GO:0060271 IMP cilium morphogenesis
GO:0070201 ISO regulation of establishment of protein localization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090807 si:ch211-185a18.2 si:ch211-185a18.2 protein_coding Danio_rerio
ENSDARG00000097772 si:ch211-185a18.2 si:ch211-185a18.2 protein_coding Danio_rerio
ENSG00000100578 KIAA0586 KIAA0586 protein_coding Homo_sapiens

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