C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: granulin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034708 Grn 10090 + 11:102430315-102437048 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049460 Grn-001 102430315-102436809 protein_coding
  ENSMUST00000123500 Grn-009 102434718-102435944 retained_intron
  ENSMUST00000125819 Grn-010 102435285-102436573 protein_coding
  ENSMUST00000127530 Grn-011 102435306-102436064 retained_intron
  ENSMUST00000129997 Grn-002 102430518-102434446 protein_coding
  ENSMUST00000135517 Grn-003 102432785-102434257 retained_intron
  ENSMUST00000138451 Grn-006 102434102-102434891 retained_intron
  ENSMUST00000148580 Grn-004 102433932-102434593 retained_intron
  ENSMUST00000176953 Grn-007 102434099-102435262 retained_intron
  ENSMUST00000177428 Grn-008 102435416-102437048 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049460ENSMUST00000125819ENSMUST00000135517
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049460 119.204±21.65 50.957±30.38 97.619±8.85 11.061±5.03 89.692±28.33 53.462±24.44 35.751±8.06 68.441±12.15 41.368±14.39 82.331±14.11 6.579±0.61 78.389±41.37 58.276±32.55 8.007±0.99
ENSMUST00000125819 N/A N/A N/A 18.906±0.00 N/A N/A N/A N/A N/A N/A 2.330±0.00 103.225±0.00 100.268±50.88 5.048±0.00
ENSMUST00000135517 N/A 92.659±11.83 N/A N/A 69.766±14.48 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005J8 CIL_0005J8_0002 CGP 11:102402985-102437048
CIL_0005J7 CIL_0005J7_0002 CGP 11:102430315-102447682

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001835 IDA blastocyst hatching
GO:0005125 IEA cytokine activity
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005739 IDA mitochondrion
GO:0007566 IDA embryo implantation
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding
GO:0050679 IDA positive regulation of epithelial cell proliferation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004954 grna granulin a protein_coding Danio_rerio
ENSDARG00000025081 grnb granulin b protein_coding Danio_rerio
ENSDARG00000088641 grn2 granulin 2 protein_coding Danio_rerio
ENSDARG00000089362 grn1 granulin 1 protein_coding Danio_rerio
ENSG00000030582 GRN granulin protein_coding Homo_sapiens

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