C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: granulin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000030582 GRN 9606 + 17:44345246-44353102 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000053867 GRN-001 44345280-44353102 protein_coding
  ENST00000585348 GRN-021 44350911-44351599 retained_intron
  ENST00000585512 GRN-009 44345302-44349275 protein_coding
  ENST00000586242 GRN-022 44352202-44353102 protein_coding
  ENST00000586443 GRN-003 44350539-44353043 protein_coding
  ENST00000586782 GRN-018 44345314-44351163 nonsense_mediated_decay
  ENST00000587109 GRN-006 44345265-44349474 protein_coding
  ENST00000587387 GRN-016 44345302-44350511 protein_coding
  ENST00000587518 GRN-007 44345265-44350287 protein_coding
  ENST00000587958 GRN-015 44345306-44349811 retained_intron
  ENST00000588143 GRN-013 44345282-44350469 protein_coding
  ENST00000588170 GRN-012 44345246-44349894 retained_intron
  ENST00000588237 GRN-017 44345302-44351044 protein_coding
  ENST00000589265 GRN-002 44345305-44353082 protein_coding
  ENST00000589536 GRN-005 44345262-44349736 protein_coding
  ENST00000589923 GRN-019 44350772-44351795 processed_transcript
  ENST00000590984 GRN-020 44350289-44351300 retained_intron
  ENST00000591740 GRN-011 44345302-44350283 protein_coding
  ENST00000592323 GRN-014 44345302-44349789 retained_intron
  ENST00000592783 GRN-010 44345302-44350304 protein_coding
  ENST00000593167 GRN-008 44345298-44350325 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000053867ENST00000586242ENST00000586443ENST00000586782ENST00000589265
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000053867 142.373±0.00 109.472±0.00 N/A 9.698±8.03 70.716±60.15 36.744±27.96 25.026±22.10 33.479±25.75 23.732±16.28 84.174±64.90 15.303±12.42 79.312±54.19 284.864±161.67 38.243±32.94
ENST00000586242 N/A 101.306±0.00 N/A N/A N/A 47.235±0.00 N/A N/A 30.883±0.00 98.244±0.00 N/A N/A N/A N/A
ENST00000586443 N/A N/A N/A 0.738±0.00 N/A N/A N/A 15.656±13.15 N/A N/A N/A 30.385±27.43 51.546±0.00 7.166±0.00
ENST00000586782 N/A N/A 3.302±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589265 N/A N/A N/A N/A N/A N/A N/A 16.861±0.00 N/A N/A N/A 48.851±0.00 76.595±0.00 17.008±4.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005J8 CIL_0005J8_0001 CGP 17:44319625-44353102
CIL_0005J7 CIL_0005J7_0001 CGP 17:44345246-44363875

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001835 IEA blastocyst hatching
GO:0005125 IEA cytokine activity
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005739 IEA mitochondrion
GO:0007165 NAS signal transduction
GO:0007566 IEA embryo implantation
GO:0008083 TAS growth factor activity
GO:0008219 IEA cell death
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0050679 IEA positive regulation of epithelial cell proliferation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004954 grna granulin a protein_coding Danio_rerio
ENSDARG00000025081 grnb granulin b protein_coding Danio_rerio
ENSDARG00000088641 grn2 granulin 2 protein_coding Danio_rerio
ENSDARG00000089362 grn1 granulin 1 protein_coding Danio_rerio
ENSMUSG00000034708 Grn granulin protein_coding Mus_musculus

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