C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1110059E24 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035171 1110059E24Rik 10090 - 19:21581202-21652976 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038830 1110059E24Rik-001 21597312-21652976 protein_coding
  ENSMUST00000177577 1110059E24Rik-009 21581202-21652728 protein_coding
  ENSMUST00000177605 1110059E24Rik-003 21598814-21604319 processed_transcript
  ENSMUST00000178012 1110059E24Rik-007 21598170-21630768 nonsense_mediated_decay
  ENSMUST00000178523 1110059E24Rik-005 21598551-21652917 protein_coding
  ENSMUST00000178781 1110059E24Rik-008 21615265-21652793 retained_intron
  ENSMUST00000179553 1110059E24Rik-002 21597701-21652800 nonsense_mediated_decay
  ENSMUST00000179768 1110059E24Rik-004 21598325-21652917 protein_coding
  ENSMUST00000180304 1110059E24Rik-006 21598826-21652610 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038830ENSMUST00000178012ENSMUST00000179553ENSMUST00000180304
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038830 3.957±1.49 1.130±0.54 13.571±0.01 8.018±4.78 3.024±0.66 4.409±0.25 2.623±0.63 3.409±0.49 4.257±1.14 4.223±1.38 2.344±0.27 3.329±3.82 7.145±4.05 4.520±1.57
ENSMUST00000178012 N/A N/A N/A 14.638±0.00 N/A N/A N/A N/A N/A N/A N/A 42.553±0.00 35.400±7.80 22.514±0.00
ENSMUST00000179553 1.639±0.37 0.398±0.12 5.874±0.21 3.671±0.13 1.199±0.00 N/A 1.343±0.00 1.560±0.60 1.793±1.00 2.079±0.00 0.811±0.12 2.441±1.50 3.774±1.17 N/A
ENSMUST00000180304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.658±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000053 CIL_000053_0002 CGP 19:21581202-21685637

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035570 C5H9orf85 chromosome 9 open reading frame 85 protein_coding Danio_rerio
ENSG00000155621 C9orf85 chromosome 9 open reading frame 85 protein_coding Homo_sapiens

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