C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: fidgetin-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035455 Fignl1 10090 - 11:11787431-11808962 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047689 Fignl1-001 11800288-11808959 protein_coding
  ENSMUST00000109664 Fignl1-002 11800552-11808932 protein_coding
  ENSMUST00000123815 Fignl1-005 11787443-11801461 processed_transcript
  ENSMUST00000150714 Fignl1-004 11802697-11808948 protein_coding
  ENSMUST00000152345 Fignl1-003 11787431-11808925 processed_transcript
  ENSMUST00000171080 Fignl1-201 11800288-11808962 protein_coding
  ENSMUST00000171938 Fignl1-202 11800288-11808962 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047689ENSMUST00000109664ENSMUST00000123815ENSMUST00000150714ENSMUST00000152345ENSMUST00000171080ENSMUST00000171938
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047689 0.821±0.69 0.387±0.01 0.309±0.02 1.757±1.24 0.356±0.14 0.590±0.14 0.071±0.00 0.100±0.03 16.534±14.52 0.321±0.13 0.074±0.03 1.474±0.63 4.234±4.13 5.614±2.19
ENSMUST00000109664 N/A 0.365±0.33 N/A 0.069±0.00 N/A 0.652±0.00 N/A 0.112±0.00 N/A 0.082±0.00 0.091±0.03 1.068±0.93 3.532±4.26 4.529±2.66
ENSMUST00000123815 N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150714 0.237±0.00 0.444±0.19 N/A N/A 0.300±0.01 0.789±0.28 0.386±0.15 0.207±0.00 0.105±0.00 N/A N/A 3.025±1.56 N/A N/A
ENSMUST00000152345 N/A N/A N/A N/A N/A 0.087±0.00 N/A N/A N/A 0.054±0.00 0.029±0.00 0.247±0.00 N/A N/A
ENSMUST00000171080 N/A 0.168±0.09 N/A 0.637±0.00 0.288±0.05 N/A 0.090±0.04 0.027±0.00 3.524±3.42 N/A 0.056±0.00 0.922±0.51 2.036±1.31 N/A
ENSMUST00000171938 N/A N/A 0.107±0.00 0.036±0.00 N/A 0.546±0.00 0.008±0.00 N/A N/A N/A 0.050±0.01 0.864±0.56 1.371±0.65 1.571±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XP CIL_0008XP_0002 VISTA 11:11227967-11828770
CIL_0008P3 CIL_0008P3_0002 VISTA 11:11375621-11977027
CIL_0008XT CIL_0008XT_0002 VISTA 11:11399170-12000205
CIL_0007SD CIL_0007SD_0002 VISTA 11:11453227-12053958
CIL_00089U CIL_00089U_0002 VISTA 11:11536402-12137998
CIL_0008KL CIL_0008KL_0002 VISTA 11:11661856-12262621
CIL_000642 CIL_000642_0002 CGP 11:11685003-11808962
CIL_000641 CIL_000641_0002 CGP 11:11787431-11898144

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 ISS nuclear chromosome
GO:0000287 ISS magnesium ion binding
GO:0001649 IMP osteoblast differentiation
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0010569 ISS regulation of double-strand break repair via homologous recombination
GO:0016787 ISS hydrolase activity
GO:0033687 IMP osteoblast proliferation
GO:0043066 IMP negative regulation of apoptotic process
GO:0046034 ISS ATP metabolic process
GO:0051726 IMP regulation of cell cycle
GO:0070062 IEA extracellular vesicular exosome
GO:0071479 ISS cellular response to ionizing radiation
GO:2001243 IMP negative regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016427 fignl1 fidgetin-like 1 protein_coding Danio_rerio
ENSG00000132436 FIGNL1 fidgetin-like 1 protein_coding Homo_sapiens

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