C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytochrome c oxidase assembly protein 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035505 Cox18 10090 - 5:90214724-90224001 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048363 Cox18-001 90214724-90224001 protein_coding
  ENSMUST00000118816 Cox18-002 90214724-90223972 protein_coding
  ENSMUST00000131068 Cox18-004 90217534-90219791 retained_intron
  ENSMUST00000133905 Cox18-006 90214727-90215581 processed_transcript
  ENSMUST00000144898 Cox18-005 90214727-90217879 retained_intron
  ENSMUST00000148480 Cox18-003 90218935-90223939 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048363ENSMUST00000118816ENSMUST00000131068ENSMUST00000133905ENSMUST00000144898ENSMUST00000148480
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048363 3.720±1.43 33.486±8.57 4.251±0.74 2.423±0.03 4.540±3.23 4.246±1.89 1.856±0.00 2.400±0.99 3.287±1.59 4.302±0.89 1.586±0.58 6.484±3.68 4.185±1.37 1.811±0.68
ENSMUST00000118816 5.697±0.97 25.540±7.61 1.582±0.34 2.010±0.11 3.438±0.32 5.425±2.30 3.018±0.33 3.673±1.19 2.991±1.60 2.878±0.68 1.540±0.43 6.238±1.68 3.344±2.96 2.611±0.91
ENSMUST00000131068 N/A N/A N/A N/A 2.727±0.00 N/A N/A N/A N/A N/A N/A N/A 0.847±0.00 N/A
ENSMUST00000133905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.552±1.15 N/A
ENSMUST00000144898 N/A N/A N/A 1.768±0.00 7.444±0.00 N/A N/A N/A N/A N/A 0.554±0.00 2.033±0.00 1.022±0.27 N/A
ENSMUST00000148480 N/A N/A 2.212±0.00 N/A N/A N/A N/A N/A 1.517±0.00 N/A 0.914±0.00 2.393±0.00 1.741±0.00 0.651±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DC CIL_0000DC_0002 CGP 5:89673841-90224001
CIL_0000D1 CIL_0000D1_0002 CGP 5:90214724-90366185

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0008535 ISS respiratory chain complex IV assembly
GO:0008565 ISS protein transporter activity
GO:0015031 ISS protein transport
GO:0016021 IEA integral component of membrane
GO:0031305 ISS integral component of mitochondrial inner membrane
GO:0051204 ISS protein insertion into mitochondrial membrane
GO:0051205 IEA protein insertion into membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079680 COX18 COX18 cytochrome C oxidase assembly factor protein_coding Danio_rerio
ENSG00000163626 COX18 COX18 cytochrome C oxidase assembly factor protein_coding Homo_sapiens

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