C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000DC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156140-ENSG00000163626 CGP 9606 4:72280969-73069755
GeneTranscriptPositionBiotype
ENSG00000156140 (ADAMTS3)
ADAM metallopeptidase with thrombospondin type 1 motif, 3 		ENST00000286657 (ADAMTS3-001) 72280969-72568799 protein_coding
ENST00000505193 (ADAMTS3-004) 72441676-72568045 processed_transcript
ENST00000511274 (ADAMTS3-005) 72298225-72312255 processed_transcript
ENST00000622135 (ADAMTS3-201) 72282041-72568796 protein_coding
ENSG00000163626 (COX18)
COX18 cytochrome C oxidase assembly factor 		ENST00000295890 (COX18-001) 73056080-73069741 protein_coding
ENST00000421792 (COX18-002) 73068551-73069755 processed_transcript
ENST00000449739 (COX18-003) 73056080-73069741 nonsense_mediated_decay
ENST00000507544 (COX18-006) 73058076-73069692 protein_coding
ENST00000510031 (COX18-004) 73058114-73069726 nonsense_mediated_decay
ENSG00000270665 (HNRNPA1P67)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 67 		ENST00000604027 (HNRNPA1P67-001) 72807267-72808192 processed_pseudogene
ENSG00000272859 (RP11-352E8.2)
 ENST00000608631 (RP11-352E8.2-001) 73052362-73052917 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000DC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000043635-ENSMUSG00000035505 CGP 10090 5:89673841-90224001
GeneTranscriptPositionBiotype
ENSMUSG00000035505 (Cox18)
cytochrome c oxidase assembly protein 18 		ENSMUST00000048363 (Cox18-001) 90214724-90224001 protein_coding
ENSMUST00000118816 (Cox18-002) 90214724-90223972 protein_coding
ENSMUST00000131068 (Cox18-004) 90217534-90219791 retained_intron
ENSMUST00000133905 (Cox18-006) 90214727-90215581 processed_transcript
ENSMUST00000144898 (Cox18-005) 90214727-90217879 retained_intron
ENSMUST00000148480 (Cox18-003) 90218935-90223939 nonsense_mediated_decay
ENSMUSG00000043618 (Eif5al3-ps)
eukaryotic translation initiation factor 5A-like 3, pseudogene 		ENSMUST00000135410 (Eif5al3-ps-001) 90132229-90132675 processed_pseudogene
ENSMUSG00000043635 (Adamts3)
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 		ENSMUST00000061427 (Adamts3-201) 89673841-89883334 protein_coding
ENSMUST00000163159 (Adamts3-202) 89673841-89883334 protein_coding
ENSMUSG00000077175 (Gm25758)
predicted gene, 25758 		ENSMUST00000103987 (Gm25758-201) 89828871-89828999 snoRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000DC_0001ENSG00000156140ENST00000286657ENST00000505193ENST00000511274ENST00000622135ENSG00000163626ENST00000295890ENST00000421792ENST00000449739ENST00000507544ENST00000510031ENSG00000270665ENST00000604027ENSG00000272859ENST00000608631CIL_0000DC_0002ENSMUSG00000035505ENSMUST00000048363ENSMUST00000118816ENSMUST00000131068ENSMUST00000133905ENSMUST00000144898ENSMUST00000148480ENSMUSG00000043618ENSMUST00000135410ENSMUSG00000043635ENSMUST00000061427ENSMUST00000163159ENSMUSG00000077175ENSMUST00000103987
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000DC_0001ENSG00000156140ENST00000286657ENST00000505193ENST00000622135ENSG00000163626ENST00000295890ENST00000421792ENST00000449739ENST00000507544ENST00000510031ENSG00000270665ENST00000604027ENSG00000272859ENST00000608631CIL_0000DC_0002ENSMUSG00000035505ENSMUST00000048363ENSMUST00000118816ENSMUST00000131068ENSMUST00000133905ENSMUST00000144898ENSMUST00000148480ENSMUSG00000043618ENSMUST00000135410ENSMUSG00000043635ENSMUST00000061427ENSMUST00000163159ENSMUSG00000077175ENSMUST00000103987
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000156140 ENST00000286657 N/A N/A N/A N/A 0.179±0.00 N/A N/A 0.215±0.21 0.135±0.00 N/A N/A 0.484±0.18 0.294±0.24 0.603±0.13
ENST00000505193 N/A N/A N/A N/A N/A 0.273±0.00 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000511274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622135 N/A N/A N/A N/A 0.120±0.00 0.134±0.00 N/A N/A N/A N/A N/A 0.226±0.00 N/A N/A
ENSG00000163626 ENST00000295890 1.040±0.00 3.770±0.00 0.404±0.00 1.854±0.03 0.658±0.18 0.871±0.00 1.125±0.43 1.829±0.57 1.545±0.74 0.524±0.26 N/A 2.149±1.30 N/A 2.649±0.00
ENST00000421792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.596±0.00 N/A N/A N/A
ENST00000449739 2.203±0.00 0.610±0.00 N/A 1.673±0.00 4.205±0.00 0.375±0.00 1.272±0.00 2.359±0.00 1.940±0.00 N/A 0.408±0.00 1.415±0.00 2.314±0.00 1.150±0.20
ENST00000507544 N/A N/A 1.294±0.00 N/A N/A N/A 1.435±0.67 N/A N/A N/A N/A N/A N/A N/A
ENST00000510031 1.757±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270665 ENST00000604027 0.028±0.00 0.073±0.00 N/A 0.075±0.00 0.044±0.00 0.041±0.00 0.040±0.00 0.015±0.00 0.039±0.00 0.019±0.00 0.013±0.00 0.059±0.03 N/A 0.023±0.00
ENSG00000272859 ENST00000608631 0.064±0.00 0.339±0.00 N/A 0.282±0.08 0.224±0.00 N/A 0.113±0.00 0.014±0.00 N/A N/A N/A 0.123±0.01 0.064±0.00 0.152±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035505 ENSMUST00000048363 3.720±1.43 33.486±8.57 4.251±0.74 2.423±0.03 4.540±3.23 4.246±1.89 1.856±0.00 2.400±0.99 3.287±1.59 4.302±0.89 1.586±0.58 6.484±3.68 4.185±1.37 1.811±0.68
ENSMUST00000118816 5.697±0.97 25.540±7.61 1.582±0.34 2.010±0.11 3.438±0.32 5.425±2.30 3.018±0.33 3.673±1.19 2.991±1.60 2.878±0.68 1.540±0.43 6.238±1.68 3.344±2.96 2.611±0.91
ENSMUST00000131068 N/A N/A N/A N/A 2.727±0.00 N/A N/A N/A N/A N/A N/A N/A 0.847±0.00 N/A
ENSMUST00000133905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.552±1.15 N/A
ENSMUST00000144898 N/A N/A N/A 1.768±0.00 7.444±0.00 N/A N/A N/A N/A N/A 0.554±0.00 2.033±0.00 1.022±0.27 N/A
ENSMUST00000148480 N/A N/A 2.212±0.00 N/A N/A N/A N/A N/A 1.517±0.00 N/A 0.914±0.00 2.393±0.00 1.741±0.00 0.651±0.00
ENSMUSG00000043618 ENSMUST00000135410 1.443±0.23 0.388±0.13 0.026±0.00 0.826±0.80 1.407±1.54 0.568±0.46 0.721±0.53 0.351±0.18 0.439±0.27 0.224±0.04 N/A 1.781±0.89 0.165±0.02 1.817±2.05
ENSMUSG00000043635 ENSMUST00000061427 1.101±0.70 1.011±0.10 0.546±0.12 1.648±0.56 0.451±0.28 0.509±0.11 0.476±0.28 0.103±0.00 0.224±0.16 0.309±0.07 0.124±0.05 0.660±0.31 0.353±0.29 0.102±0.00
ENSMUST00000163159 N/A 0.300±0.00 N/A N/A N/A 0.348±0.06 N/A 0.128±0.01 0.035±0.01 N/A N/A 0.652±0.25 0.115±0.04 0.046±0.01
ENSMUSG00000077175 ENSMUST00000103987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2183.950±0.00 N/A N/A

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