C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA splicing endonuclease 34 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035585 Tsen34 10090 + 7:3693375-3701023 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038521 Tsen34-002 3693765-3701012 protein_coding
  ENSMUST00000108627 Tsen34-004 3694523-3701004 protein_coding
  ENSMUST00000108629 Tsen34-003 3693809-3701004 protein_coding
  ENSMUST00000108630 Tsen34-001 3693375-3701023 protein_coding
  ENSMUST00000123088 Tsen34-006 3693602-3695186 protein_coding
  ENSMUST00000137204 Tsen34-008 3694298-3695093 protein_coding
  ENSMUST00000139396 Tsen34-010 3694774-3695625 processed_transcript
  ENSMUST00000142713 Tsen34-007 3693829-3695209 protein_coding
  ENSMUST00000147288 Tsen34-005 3695349-3695834 processed_transcript
  ENSMUST00000155060 Tsen34-009 3694508-3700602 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038521ENSMUST00000108627ENSMUST00000108629ENSMUST00000108630ENSMUST00000123088ENSMUST00000142713ENSMUST00000155060
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038521 N/A N/A N/A N/A N/A N/A 4.765±0.00 N/A 7.167±0.55 N/A 6.218±0.00 21.247±0.00 23.397±3.75 N/A
ENSMUST00000108627 36.357±6.53 97.364±9.48 32.152±5.91 168.012±111.11 35.757±10.54 35.380±4.31 16.825±2.15 29.276±2.56 15.166±4.13 30.081±3.22 8.953±1.83 54.168±12.67 40.998±2.76 5.016±0.37
ENSMUST00000108629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.237±0.00 N/A 19.516±3.43 1.545±0.00
ENSMUST00000108630 N/A N/A 10.498±2.40 24.416±1.75 N/A N/A 7.974±2.20 N/A 6.935±0.80 N/A 3.921±0.33 N/A 19.265±1.75 N/A
ENSMUST00000123088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 82.598±0.00 5.455±0.00
ENSMUST00000142713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.517±0.00 62.217±0.00 N/A
ENSMUST00000155060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.179±0.00 27.020±0.00 2.919±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JN CIL_0001JN_0002 CGP 7:3665790-3693523
CIL_0005M7 CIL_0005M7_0002 CGP 7:3677790-3701023
CIL_0005M6 CIL_0005M6_0002 CGP 7:3693375-3706901

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0000214 IEA tRNA-intron endonuclease complex
GO:0000379 IEA tRNA-type intron splice site recognition and cleavage
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0006397 IEA mRNA processing
GO:0016829 IEA lyase activity
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061370 tsen34 tRNA splicing endonuclease 34 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000170892 TSEN34 TSEN34 tRNA splicing endonuclease subunit protein_coding Homo_sapiens

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