C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA splicing endonuclease 34 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108627 Tsen34-004 ENSMUSG00000035585 10090 + 7:3694523-3701004 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108627
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108627 36.357±6.53 97.364±9.48 32.152±5.91 168.012±111.11 35.757±10.54 35.380±4.31 16.825±2.15 29.276±2.56 15.166±4.13 30.081±3.22 8.953±1.83 54.168±12.67 40.998±2.76 5.016±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JN CIL_0001JN_0002 CGP 7:3665790-3693523
CIL_0005M7 CIL_0005M7_0002 CGP 7:3677790-3701023
CIL_0005M6 CIL_0005M6_0002 CGP 7:3693375-3706901

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0000214 IEA tRNA-intron endonuclease complex
GO:0000379 IEA tRNA-type intron splice site recognition and cleavage
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0006397 IEA mRNA processing
GO:0016829 IEA lyase activity
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302937 TSEN34-001 protein_coding Homo_sapiens 0 885
ENST00000396383 TSEN34-003 protein_coding Homo_sapiens 0 885
ENST00000396388 TSEN34-004 protein_coding Homo_sapiens 0 894
ENST00000429671 TSEN34-201 protein_coding Homo_sapiens 0 826
ENST00000455798 TSEN34-006 protein_coding Homo_sapiens 0 667
ENST00000456872 TSEN34-005 protein_coding Homo_sapiens 0 701
ENST00000496583 TSEN34-002 retained_intron Homo_sapiens 0 291
ENST00000611560 TSEN34-212 protein_coding Homo_sapiens 0 880
ENST00000611798 TSEN34-001 protein_coding Homo_sapiens 0 880
ENST00000612236 TSEN34-001 protein_coding Homo_sapiens 0 885
ENST00000612393 TSEN34-003 protein_coding Homo_sapiens 0 894
ENST00000613310 TSEN34-205 protein_coding Homo_sapiens 0 880
ENST00000613337 TSEN34-206 protein_coding Homo_sapiens 0 821
ENST00000613589 TSEN34-006 retained_intron Homo_sapiens 0 291
ENST00000613653 TSEN34-213 protein_coding Homo_sapiens 0 821
ENST00000613712 TSEN34-202 protein_coding Homo_sapiens 0 880
ENST00000613888 TSEN34-219 protein_coding Homo_sapiens 0 880
ENST00000614265 TSEN34-006 retained_intron Homo_sapiens 0 291
ENST00000614483 TSEN34-005 protein_coding Homo_sapiens 0 821
ENST00000614734 TSEN34-209 protein_coding Homo_sapiens 0 821
ENST00000614948 TSEN34-002 protein_coding Homo_sapiens 0 885
ENST00000614984 TSEN34-220 protein_coding Homo_sapiens 0 880
ENST00000615000 TSEN34-003 protein_coding Homo_sapiens 0 880
ENST00000615079 TSEN34-004 protein_coding Homo_sapiens 0 889
ENST00000615482 TSEN34-007 protein_coding Homo_sapiens 0 667
ENST00000615811 TSEN34-221 protein_coding Homo_sapiens 0 821
ENST00000615900 TSEN34-207 protein_coding Homo_sapiens 0 880
ENST00000615975 TSEN34-001 protein_coding Homo_sapiens 0 885
ENST00000616063 TSEN34-002 protein_coding Homo_sapiens 0 885
ENST00000616209 TSEN34-210 protein_coding Homo_sapiens 0 880
ENST00000617149 TSEN34-203 protein_coding Homo_sapiens 0 880
ENST00000617543 TSEN34-218 protein_coding Homo_sapiens 0 826
ENST00000617559 TSEN34-005 protein_coding Homo_sapiens 0 701
ENST00000617739 TSEN34-005 protein_coding Homo_sapiens 0 708
ENST00000617902 TSEN34-215 protein_coding Homo_sapiens 0 880
ENST00000618135 TSEN34-003 protein_coding Homo_sapiens 0 894
ENST00000618447 TSEN34-208 protein_coding Homo_sapiens 0 826
ENST00000619263 TSEN34-204 protein_coding Homo_sapiens 0 821
ENST00000619273 TSEN34-216 protein_coding Homo_sapiens 0 821
ENST00000619994 TSEN34-217 protein_coding Homo_sapiens 0 880
ENST00000621740 TSEN34-004 protein_coding Homo_sapiens 0 667
ENST00000622076 TSEN34-004 protein_coding Homo_sapiens 0 667
ENST00000622524 TSEN34-211 protein_coding Homo_sapiens 0 880
ENST00000622538 TSEN34-214 protein_coding Homo_sapiens 0 880
ENST00000622661 TSEN34-002 retained_intron Homo_sapiens 0 291

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