C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TSEN34 tRNA splicing endonuclease subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170892 TSEN34 9606 + 19:54189938-54194536 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302937 TSEN34-001 54190268-54194536 protein_coding
  ENST00000396383 TSEN34-003 54190731-54193666 protein_coding
  ENST00000396388 TSEN34-004 54191253-54193666 protein_coding
  ENST00000429671 TSEN34-201 54190268-54194536 protein_coding
  ENST00000455798 TSEN34-006 54189938-54192355 protein_coding
  ENST00000456872 TSEN34-005 54190268-54192373 protein_coding
  ENST00000496583 TSEN34-002 54190343-54193666 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302937ENST00000396388ENST00000455798ENST00000456872ENST00000496583
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302937 1.088±0.00 0.836±0.00 0.703±0.00 0.410±0.07 0.182±0.00 0.478±0.00 N/A 1.653±0.00 0.331±0.00 0.492±0.00 N/A 1.627±1.03 6.492±0.00 2.175±0.52
ENST00000396388 13.683±0.00 11.543±0.00 1.499±0.00 4.916±3.19 8.136±6.03 10.450±8.91 4.637±4.19 12.163±8.54 6.512±4.24 15.281±12.08 8.947±8.49 28.148±21.89 27.679±16.60 16.300±5.45
ENST00000455798 N/A N/A N/A N/A 0.712±0.00 0.968±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456872 N/A N/A N/A N/A 7.767±0.00 N/A 0.298±0.00 N/A 1.954±0.00 N/A N/A N/A N/A N/A
ENST00000496583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.590±0.00 1.418±0.00 2.913±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005M7 CIL_0005M7_0001 CGP 19:54173412-54194536
CIL_0005M6 CIL_0005M6_0001 CGP 19:54189938-54249003

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0000214 IEA tRNA-intron endonuclease complex
GO:0000379 IEA tRNA-type intron splice site recognition and cleavage
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing
GO:0016829 IEA lyase activity
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061370 tsen34 tRNA splicing endonuclease 34 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000035585 Tsen34 tRNA splicing endonuclease 34 homolog (S. cerevisiae) protein_coding Mus_musculus

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