C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor IIIC, polypeptide 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035666 Gtf3c4 10090 - 2:28822299-28840360 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037117 Gtf3c4-001 28822305-28840286 protein_coding
  ENSMUST00000124390 Gtf3c4-002 28835304-28840352 processed_transcript
  ENSMUST00000156468 Gtf3c4-003 28835204-28840286 processed_transcript
  ENSMUST00000171404 Gtf3c4-201 28822299-28840360 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037117ENSMUST00000124390ENSMUST00000171404
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037117 4.832±2.29 3.964±0.91 2.970±0.03 6.131±2.56 4.583±0.44 3.313±0.51 2.624±0.34 3.265±0.32 2.933±0.66 4.099±0.18 2.530±0.24 7.395±0.76 4.325±1.51 5.237±1.38
ENSMUST00000124390 N/A 3.821±1.26 N/A N/A N/A 2.162±0.05 N/A N/A N/A N/A N/A 4.390±0.48 N/A N/A
ENSMUST00000171404 N/A 1.335±0.67 0.396±0.00 1.278±0.56 0.492±0.00 0.676±0.00 0.552±0.00 0.878±0.00 0.832±0.18 0.584±0.01 N/A 1.308±0.00 N/A 0.431±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OT CIL_0007OT_0002 UCNEbase 2:28706607-28885151

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000127 IEA transcription factor TFIIIC complex
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0004402 IEA histone acetyltransferase activity
GO:0006351 IEA transcription, DNA-templated
GO:0008150 ND biological_process
GO:0016573 IEA histone acetylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069538 gtf3c4 general transcription factor IIIC, polypeptide 4 protein_coding Danio_rerio
ENSG00000125484 GTF3C4 general transcription factor IIIC, polypeptide 4, 90kDa protein_coding Homo_sapiens

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