C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: surfeit gene 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036160 Surf6 10090 - 2:26888628-26902879 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047632 Surf6-001 26890435-26902879 protein_coding
  ENSMUST00000114043 Surf6-007 26890772-26902850 protein_coding
  ENSMUST00000127691 Surf6-006 26899094-26899768 processed_transcript
  ENSMUST00000129554 Surf6-005 26888925-26892173 processed_transcript
  ENSMUST00000137904 Surf6-004 26888989-26899425 processed_transcript
  ENSMUST00000140392 Surf6-003 26888628-26892611 processed_transcript
  ENSMUST00000142131 Surf6-002 26892675-26902790 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047632ENSMUST00000140392
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047632 4.824±1.15 4.070±0.56 6.334±0.46 7.223±0.56 4.024±1.48 4.975±0.56 1.873±0.51 3.085±0.30 5.779±2.60 4.139±0.53 2.124±0.28 5.908±2.69 8.872±2.94 2.314±0.22
ENSMUST00000140392 0.950±0.00 N/A N/A 2.884±0.15 1.778±0.31 1.998±0.17 0.682±0.18 1.036±0.00 N/A N/A N/A 2.637±1.05 N/A 0.672±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006IX CIL_0006IX_0002 CGP 2:26842503-26902879
CIL_0006DI CIL_0006DI_0002 CGP 2:26888628-26910677

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001652 IDA granular component
GO:0003677 IDA DNA binding
GO:0003723 IDA RNA binding
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0042254 IMP ribosome biogenesis
GO:0042255 NAS ribosome assembly
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035427 surf6 surfeit 6 protein_coding Danio_rerio
ENSG00000148296 SURF6 surfeit 6 protein_coding Homo_sapiens

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