C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAR-related orphan receptor beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036192 Rorb 10090 - 19:18930605-19111196 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040153 Rorb-001 18930605-19001117 protein_coding
  ENSMUST00000112828 Rorb-002 18936563-19001117 protein_coding
  ENSMUST00000112832 Rorb-005 18930605-19111196 protein_coding
  ENSMUST00000147907 Rorb-004 18975980-19001111 retained_intron
  ENSMUST00000149635 Rorb-003 18975962-19001100 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040153ENSMUST00000112828ENSMUST00000112832ENSMUST00000147907
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040153 0.006±0.00 0.037±0.00 N/A 0.644±0.00 0.037±0.02 0.023±0.00 0.028±0.00 0.040±0.00 0.004±0.00 0.014±0.00 0.007±0.00 0.054±0.01 0.014±0.00 0.015±0.00
ENSMUST00000112828 0.342±0.44 0.068±0.00 N/A N/A 0.039±0.03 0.056±0.02 N/A 0.041±0.00 0.002±0.00 0.045±0.00 N/A 0.156±0.16 0.014±0.01 0.030±0.00
ENSMUST00000112832 1.781±0.13 0.053±0.03 0.031±0.00 1.102±0.21 0.060±0.03 0.037±0.00 0.058±0.01 0.046±0.01 0.003±0.00 0.037±0.00 N/A 0.101±0.07 0.014±0.00 0.003±0.00
ENSMUST00000147907 N/A 0.066±0.04 0.016±0.00 N/A N/A 0.021±0.00 0.046±0.00 N/A N/A N/A N/A 0.141±0.00 0.007±0.00 0.013±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007601 IEA visual perception
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0030522 IEA intracellular receptor signaling pathway
GO:0035881 IMP amacrine cell differentiation
GO:0042462 IMP eye photoreceptor cell development
GO:0042752 IMP regulation of circadian rhythm
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA sequence-specific DNA binding
GO:0045668 IDA negative regulation of osteoblast differentiation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046548 IMP retinal rod cell development
GO:0046549 IDA retinal cone cell development
GO:0048511 IEA rhythmic process
GO:0060041 IMP retina development in camera-type eye
GO:0071300 ISS cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033498 rorb RAR-related orphan receptor B protein_coding Danio_rerio
ENSG00000198963 RORB RAR-related orphan receptor B protein_coding Homo_sapiens

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