C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAR-related orphan receptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112828 Rorb-002 ENSMUSG00000036192 10090 - 19:18936563-19001117 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000112828
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000112828 0.342±0.44 0.068±0.00 0.039±0.03 0.056±0.02 0.041±0.00 0.002±0.00 0.045±0.00 0.156±0.16 0.014±0.01 0.030±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007601 IEA visual perception
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0030522 IEA intracellular receptor signaling pathway
GO:0035881 IMP amacrine cell differentiation
GO:0042462 IMP eye photoreceptor cell development
GO:0042752 IMP regulation of circadian rhythm
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA sequence-specific DNA binding
GO:0045668 IDA negative regulation of osteoblast differentiation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046548 IMP retinal rod cell development
GO:0046549 IDA retinal cone cell development
GO:0048511 IEA rhythmic process
GO:0060041 IMP retina development in camera-type eye
GO:0071300 ISS cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000376896 RORB-001 protein_coding Homo_sapiens 0 2784
ENST00000396204 RORB-201 protein_coding Homo_sapiens 0 2782

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