C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cDNA sequence BC027231
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048788 BC027231-001 ENSMUSG00000036208 10090 + 16:44724301-44737284 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048788
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048788 3.075±0.92 7.220±0.00 3.233±1.06 2.115±0.44 2.150±0.32 4.982±0.28 0.863±0.06 1.676±0.24 2.673±0.93 2.130±0.94 1.100±0.15 4.357±2.01 4.018±1.76 2.088±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UB CIL_0008UB_0002 VISTA 16:44376757-44981297

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IDA nucleus
GO:0045665 IDA negative regulation of neuron differentiation
GO:0045747 IMP positive regulation of Notch signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314400 C3orf17-001 protein_coding Homo_sapiens 0 931
ENST00000383675 C3orf17-002 protein_coding Homo_sapiens 0 462
ENST00000462295 C3orf17-006 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000469169 C3orf17-008 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000469809 C3orf17-010 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000472637 C3orf17-011 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000472705 C3orf17-009 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000473284 C3orf17-007 nonsense_mediated_decay Homo_sapiens 0 723
ENST00000474311 C3orf17-012 retained_intron Homo_sapiens 0 315
ENST00000486271 C3orf17-003 retained_intron Homo_sapiens 0 538
ENST00000489848 C3orf17-005 nonsense_mediated_decay Homo_sapiens 0 462

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