C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA C530008M17 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036377 C530008M17Rik 10090 + 5:76656512-76873554 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000086909 C530008M17Rik-201 76656512-76658355 protein_coding
  ENSMUST00000120639 C530008M17Rik-002 76840599-76873545 protein_coding
  ENSMUST00000120818 C530008M17Rik-004 76809988-76842589 protein_coding
  ENSMUST00000121160 C530008M17Rik-001 76752368-76873330 protein_coding
  ENSMUST00000121851 C530008M17Rik-003 76840619-76842591 protein_coding
  ENSMUST00000125922 C530008M17Rik-006 76657721-76790136 processed_transcript
  ENSMUST00000128112 C530008M17Rik-005 76657683-76840881 protein_coding
  ENSMUST00000149216 C530008M17Rik-009 76869188-76870674 processed_transcript
  ENSMUST00000151567 C530008M17Rik-008 76866101-76868417 protein_coding
  ENSMUST00000152373 C530008M17Rik-007 76858842-76866491 retained_intron
  ENSMUST00000163347 C530008M17Rik-202 76840599-76873554 protein_coding
  ENSMUST00000187287 C530008M17Rik-010 76657685-76659108 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086909ENSMUST00000120639ENSMUST00000121160ENSMUST00000121851ENSMUST00000128112ENSMUST00000151567ENSMUST00000163347
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086909 N/A 0.546±0.00 N/A N/A 0.068±0.01 6.361±0.74 N/A 0.065±0.00 14.402±6.79 0.426±0.00 N/A 0.731±0.22 0.084±0.00 N/A
ENSMUST00000120639 0.075±0.04 0.669±0.39 0.617±0.08 13.309±1.53 0.117±0.09 5.114±1.05 0.131±0.00 0.052±0.02 0.716±0.90 0.295±0.04 0.131±0.02 0.351±0.14 0.239±0.28 19.582±1.73
ENSMUST00000121160 0.134±0.09 0.765±0.00 0.391±0.00 11.640±4.99 0.159±0.00 2.483±0.75 0.264±0.06 0.017±0.00 1.788±0.92 0.339±0.04 0.346±0.05 0.565±0.31 0.318±0.17 21.726±9.06
ENSMUST00000121851 N/A N/A N/A N/A 0.201±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128112 0.412±0.00 9.142±5.18 N/A N/A 0.883±0.42 26.712±4.05 N/A 0.212±0.00 N/A 3.979±0.82 N/A 2.947±1.28 N/A N/A
ENSMUST00000151567 N/A N/A N/A N/A N/A N/A 2.852±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163347 0.066±0.03 0.400±0.07 0.180±0.00 6.409±0.00 0.062±0.02 2.704±0.67 N/A 0.040±0.02 0.349±0.84 0.271±0.02 N/A 0.317±0.11 0.035±0.03 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084Q CIL_00084Q_0002 VISTA 5:76362343-76966797
CIL_00025G CIL_00025G_0002 CGP 5:76588698-76873554
CIL_0005R2 CIL_0005R2_0002 CGP 5:76656512-76905514

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011602 si:dkeyp-117h8.2 si:dkeyp-117h8.2 protein_coding Danio_rerio
ENSG00000109265 KIAA1211 KIAA1211 protein_coding Homo_sapiens

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