C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sec24 related gene family, member A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036391 Sec24a 10090 - 11:51692264-51763634 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038210 Sec24a-006 51694635-51756211 protein_coding
  ENSMUST00000064297 Sec24a-004 51721690-51756438 protein_coding
  ENSMUST00000109092 Sec24a-005 51721690-51756431 protein_coding
  ENSMUST00000109097 Sec24a-001 51692264-51756618 protein_coding
  ENSMUST00000147255 Sec24a-003 51729068-51757161 retained_intron
  ENSMUST00000154325 Sec24a-002 51740562-51763634 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038210ENSMUST00000064297ENSMUST00000109092ENSMUST00000109097
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038210 2.657±0.50 N/A N/A 0.964±0.00 3.101±1.51 2.039±0.00 1.583±0.47 1.821±0.50 5.400±1.55 1.533±0.00 N/A 2.506±0.41 3.666±0.98 3.836±1.60
ENSMUST00000064297 2.848±1.05 7.316±0.73 N/A N/A 3.492±0.99 5.669±2.09 0.982±0.00 2.262±0.84 4.355±0.62 2.043±0.00 N/A 3.807±1.27 N/A 4.220±0.31
ENSMUST00000109092 N/A 2.080±0.00 N/A N/A 2.055±0.00 3.326±0.40 N/A N/A N/A 1.677±0.00 N/A 2.820±0.47 N/A N/A
ENSMUST00000109097 3.182±1.45 3.161±0.79 4.417±0.46 4.426±0.61 3.138±0.79 4.808±0.63 1.339±0.55 2.320±0.92 6.961±2.43 4.063±0.59 3.193±0.27 3.797±1.32 6.005±3.20 1.724±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0002 VISTA 11:51640537-52246109

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0030127 IEA COPII vesicle coat
GO:0045714 IMP regulation of low-density lipoprotein particle receptor biosynthetic process
GO:0050714 IMP positive regulation of protein secretion
GO:2000189 IMP positive regulation of cholesterol homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053439 sec24a SEC24 family, member A (S. cerevisiae) protein_coding Danio_rerio
ENSG00000113615 SEC24A SEC24 family member A protein_coding Homo_sapiens

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