C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036510 Cdh8 10090 - 8:99024471-99416471 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000093249 Cdh8-002 99028769-99416439 protein_coding
  ENSMUST00000126895 Cdh8-007 99170790-99279473 retained_intron
  ENSMUST00000128860 Cdh8-001 99028961-99416471 protein_coding
  ENSMUST00000142129 Cdh8-005 99024882-99416427 protein_coding
  ENSMUST00000142475 Cdh8-003 99221959-99416439 protein_coding
  ENSMUST00000145601 Cdh8-006 99028961-99416319 nonsense_mediated_decay
  ENSMUST00000155527 Cdh8-004 99024471-99416427 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000093249ENSMUST00000126895ENSMUST00000128860ENSMUST00000142129ENSMUST00000142475ENSMUST00000145601ENSMUST00000155527
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000093249 N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A 0.066±0.00 N/A N/A
ENSMUST00000126895 N/A N/A N/A N/A N/A 0.133±0.00 0.044±0.01 0.012±0.00 0.041±0.00 0.125±0.09 0.028±0.01 N/A
ENSMUST00000128860 N/A 0.165±0.05 4.707±0.76 0.029±0.00 N/A N/A N/A 0.017±0.00 N/A 0.018±0.00 0.002±0.00 N/A
ENSMUST00000142129 0.012±0.00 0.381±0.02 9.923±4.76 N/A 0.156±0.03 0.045±0.02 0.038±0.01 0.023±0.02 0.034±0.00 0.049±0.00 0.018±0.00 0.042±0.00
ENSMUST00000142475 N/A N/A N/A N/A 0.085±0.00 0.038±0.01 N/A N/A 0.029±0.00 0.246±0.00 N/A N/A
ENSMUST00000145601 N/A N/A N/A 0.038±0.00 N/A N/A N/A 0.005±0.00 N/A 0.023±0.01 N/A N/A
ENSMUST00000155527 N/A N/A 1.218±0.00 N/A N/A N/A N/A N/A N/A 0.060±0.03 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 IMP synaptic transmission
GO:0009409 IMP response to cold
GO:0016021 IEA integral component of membrane
GO:0035249 IMP synaptic transmission, glutamatergic
GO:0043083 IDA synaptic cleft
GO:0043679 IDA axon terminus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037478 CDH8 cadherin 8, type 2 protein_coding Danio_rerio
ENSG00000150394 CDH8 cadherin 8, type 2 protein_coding Homo_sapiens

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