C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH3 domain and tetratricopeptide repeats 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036553 Sh3tc1 10090 - 5:35697180-35729276 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070203 Sh3tc1-001 35697180-35729276 protein_coding
  ENSMUST00000127288 Sh3tc1-002 35697181-35723946 nonsense_mediated_decay
  ENSMUST00000127825 Sh3tc1-003 35697180-35721603 protein_coding
  ENSMUST00000129664 Sh3tc1-005 35697183-35716251 nonsense_mediated_decay
  ENSMUST00000151555 Sh3tc1-004 35697185-35719238 retained_intron
  ENSMUST00000154118 Sh3tc1-006 35723068-35729012 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070203ENSMUST00000127288ENSMUST00000127825ENSMUST00000129664ENSMUST00000151555
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070203 3.780±1.68 4.247±0.65 0.515±0.10 0.198±0.05 3.230±1.14 2.948±0.37 0.782±0.29 3.886±1.01 0.456±0.15 5.926±1.44 0.493±0.09 2.202±0.63 3.940±1.93 0.051±0.01
ENSMUST00000127288 2.673±0.59 2.313±0.61 0.259±0.00 0.242±0.16 1.495±0.47 1.536±0.50 0.337±0.00 3.089±1.52 0.202±0.04 2.262±0.05 0.456±0.05 1.757±0.64 1.132±0.00 0.109±0.00
ENSMUST00000127825 N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A 0.364±0.05 3.945±0.00 16.762±12.73 0.052±0.00
ENSMUST00000129664 4.678±2.35 7.504±1.09 0.420±0.03 0.299±0.13 5.383±0.67 4.209±0.77 1.131±0.52 7.460±0.88 0.376±0.13 9.024±0.61 0.232±0.08 4.445±1.50 6.537±5.13 0.132±0.05
ENSMUST00000151555 N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A 0.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032F CIL_00032F_0002 CGP 5:35652041-35729276

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077330 SH3TC1 (1 of 2) SH3 domain and tetratricopeptide repeats 1 protein_coding Danio_rerio
ENSDARG00000078437 CR382383.3 Uncharacterized protein protein_coding Danio_rerio
ENSG00000125089 SH3TC1 SH3 domain and tetratricopeptide repeats 1 protein_coding Homo_sapiens

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