C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3 domain and tetratricopeptide repeats 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127825 Sh3tc1-003 ENSMUSG00000036553 10090 - 5:35697180-35721603 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENSMUST00000127825
Transcript ID Brain Muscle Ovary Placenta Testis
ENSMUST00000127825 0.090±0.00 0.364±0.05 3.945±0.00 16.762±12.73 0.052±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032F CIL_00032F_0002 CGP 5:35652041-35729276

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245105 SH3TC1-001 protein_coding Homo_sapiens 0 1989
ENST00000502350 SH3TC1-009 retained_intron Homo_sapiens 0 429
ENST00000502559 SH3TC1-008 retained_intron Homo_sapiens 0 431
ENST00000502669 SH3TC1-002 nonsense_mediated_decay Homo_sapiens 0 1367
ENST00000503284 SH3TC1-013 processed_transcript Homo_sapiens 0 291
ENST00000506360 SH3TC1-015 retained_intron Homo_sapiens 0 1077
ENST00000508183 SH3TC1-010 retained_intron Homo_sapiens 0 431
ENST00000509119 SH3TC1-011 protein_coding Homo_sapiens 0 361
ENST00000511002 SH3TC1-017 nonsense_mediated_decay Homo_sapiens 0 429
ENST00000512100 SH3TC1-023 retained_intron Homo_sapiens 0 399
ENST00000513495 SH3TC1-016 retained_intron Homo_sapiens 0 294
ENST00000515682 SH3TC1-003 nonsense_mediated_decay Homo_sapiens 0 1989

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