C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3 domain and tetratricopeptide repeats 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127288 Sh3tc1-002 ENSMUSG00000036553 10090 - 5:35697181-35723946 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127288
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127288 2.673±0.59 2.313±0.61 0.259±0.00 0.242±0.16 1.495±0.47 1.536±0.50 0.337±0.00 3.089±1.52 0.202±0.04 2.262±0.05 0.456±0.05 1.757±0.64 1.132±0.00 0.109±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032F CIL_00032F_0002 CGP 5:35652041-35729276

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245105 SH3TC1-001 protein_coding Homo_sapiens 0 2324
ENST00000502350 SH3TC1-009 retained_intron Homo_sapiens 0 907
ENST00000502559 SH3TC1-008 retained_intron Homo_sapiens 0 431
ENST00000502669 SH3TC1-002 nonsense_mediated_decay Homo_sapiens 0 1367
ENST00000503284 SH3TC1-013 processed_transcript Homo_sapiens 2e-33 147
ENST00000506360 SH3TC1-015 retained_intron Homo_sapiens 0 1077
ENST00000508183 SH3TC1-010 retained_intron Homo_sapiens 0 431
ENST00000509119 SH3TC1-011 protein_coding Homo_sapiens 0 217
ENST00000511002 SH3TC1-017 nonsense_mediated_decay Homo_sapiens 0 473
ENST00000512100 SH3TC1-023 retained_intron Homo_sapiens 0 255
ENST00000513495 SH3TC1-016 retained_intron Homo_sapiens 0 294
ENST00000515682 SH3TC1-003 nonsense_mediated_decay Homo_sapiens 0 2324

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