C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037197 Rbm17 10090 - 2:11585439-11604153 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040314 Rbm17-001 11585439-11603235 protein_coding
  ENSMUST00000125808 Rbm17-006 11585439-11585990 processed_transcript
  ENSMUST00000130766 Rbm17-002 11585851-11603130 processed_transcript
  ENSMUST00000131036 Rbm17-004 11587391-11590858 processed_transcript
  ENSMUST00000150369 Rbm17-005 11585441-11587168 processed_transcript
  ENSMUST00000156469 Rbm17-003 11596682-11604153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040314ENSMUST00000125808ENSMUST00000131036ENSMUST00000150369ENSMUST00000156469
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040314 12.770±3.23 5.063±1.63 30.505±0.40 38.469±8.39 4.410±1.99 3.583±1.03 6.757±0.80 7.816±1.54 25.331±18.66 8.341±1.70 15.148±0.79 21.534±31.98 64.644±35.07 28.912±29.27
ENSMUST00000125808 N/A N/A N/A 42.799±0.00 N/A N/A N/A N/A N/A N/A N/A 97.800±0.00 98.309±18.84 N/A
ENSMUST00000131036 7.139±2.05 5.114±0.00 N/A N/A 5.394±1.27 4.901±1.47 2.660±0.14 5.739±0.66 N/A 7.501±2.26 N/A 5.694±0.48 N/A N/A
ENSMUST00000150369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.014±1.48 N/A N/A
ENSMUST00000156469 7.173±2.20 6.586±1.57 N/A N/A 8.257±2.68 7.834±1.06 3.505±0.32 5.557±0.59 4.407±0.00 5.987±0.91 N/A 12.030±2.65 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QD CIL_0000QD_0002 CGP 2:11471430-11604153

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000380 ISS alternative mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031346 rbm17 RNA binding motif protein 17 protein_coding Danio_rerio
ENSG00000134453 RBM17 RNA binding motif protein 17 protein_coding Homo_sapiens

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