C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134453 RBM17 9606 + 10:6088987-6117457 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000379888 RBM17-003 6088987-6116880 protein_coding
  ENST00000418631 RBM17-006 6096910-6110059 protein_coding
  ENST00000432931 RBM17-007 6089071-6110090 protein_coding
  ENST00000437845 RBM17-005 6089054-6112321 protein_coding
  ENST00000446108 RBM17-201 6089346-6117457 protein_coding
  ENST00000447032 RBM17-009 6104971-6112461 protein_coding
  ENST00000465906 RBM17-002 6113363-6115834 retained_intron
  ENST00000467080 RBM17-001 6113907-6115834 retained_intron
  ENST00000467214 RBM17-008 6104946-6106377 retained_intron
  ENST00000476706 RBM17-011 6112702-6115766 processed_transcript
  ENST00000481147 RBM17-010 6108488-6112423 processed_transcript
  ENST00000496762 RBM17-004 6114147-6115872 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379888ENST00000418631ENST00000432931ENST00000437845ENST00000446108ENST00000447032ENST00000476706
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379888 10.222±0.00 9.243±0.00 0.721±0.00 4.541±1.30 3.236±0.21 2.967±1.41 4.333±3.01 1.487±0.00 2.484±0.18 2.889±0.00 6.014±3.95 13.211±5.70 12.000±0.76 11.938±2.82
ENST00000418631 N/A N/A 2.777±0.00 N/A 5.233±0.00 4.680±0.00 N/A N/A 4.973±0.00 N/A N/A 5.346±0.00 N/A N/A
ENST00000432931 N/A N/A N/A N/A N/A N/A N/A 1.809±0.00 N/A N/A 3.119±0.00 N/A N/A N/A
ENST00000437845 N/A N/A 1.964±0.00 N/A 4.296±0.00 N/A 11.025±0.00 N/A 8.274±0.00 41.650±0.00 21.299±0.00 18.387±14.06 17.753±7.57 N/A
ENST00000446108 N/A N/A N/A 0.606±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447032 19.889±0.00 32.439±0.00 N/A N/A 20.927±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476706 11.228±0.00 26.243±0.00 2.905±0.00 3.636±0.00 11.174±0.00 7.605±3.23 6.257±0.00 11.877±0.00 3.481±1.04 18.045±0.00 5.455±0.00 27.933±5.87 10.065±2.75 25.496±0.71

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IMP alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031346 rbm17 RNA binding motif protein 17 protein_coding Danio_rerio
ENSMUSG00000037197 Rbm17 RNA binding motif protein 17 protein_coding Mus_musculus

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