C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040314 Rbm17-001 ENSMUSG00000037197 10090 - 2:11585439-11603235 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040314
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040314 12.770±3.23 5.063±1.63 30.505±0.40 38.469±8.39 4.410±1.99 3.583±1.03 6.757±0.80 7.816±1.54 25.331±18.66 8.341±1.70 15.148±0.79 21.534±31.98 64.644±35.07 28.912±29.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QD CIL_0000QD_0002 CGP 2:11471430-11604153

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000380 ISS alternative mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379888 RBM17-003 protein_coding Homo_sapiens 0 1712
ENST00000418631 RBM17-006 protein_coding Homo_sapiens 0 833
ENST00000432931 RBM17-007 protein_coding Homo_sapiens 0 907
ENST00000437845 RBM17-005 protein_coding Homo_sapiens 0 850
ENST00000446108 RBM17-201 protein_coding Homo_sapiens 0 1637
ENST00000447032 RBM17-009 protein_coding Homo_sapiens 0 708
ENST00000465906 RBM17-002 retained_intron Homo_sapiens 0 385
ENST00000467080 RBM17-001 retained_intron Homo_sapiens 0 292
ENST00000476706 RBM17-011 processed_transcript Homo_sapiens 0 619
ENST00000481147 RBM17-010 processed_transcript Homo_sapiens 0 424
ENST00000496762 RBM17-004 retained_intron Homo_sapiens 0 368
ENST00000558517 RBM17P4-001 processed_pseudogene Homo_sapiens 0 1201

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