C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: aldehyde dehydrogenase 8 family, member A1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037542 Aldh8a1 10090 + 10:21377291-21396585 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042699 Aldh8a1-001 21377291-21396585 protein_coding
  ENSMUST00000159163 Aldh8a1-003 21377347-21388996 protein_coding
  ENSMUST00000161285 Aldh8a1-002 21377300-21385542 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042699ENSMUST00000159163ENSMUST00000161285
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042699 0.029±0.00 N/A 0.009±0.00 0.047±0.03 0.240±0.18 0.029±0.00 0.091±0.02 75.765±27.81 79.169±61.46 0.082±0.06 0.031±0.01 0.090±0.04 0.466±0.39 1.008±0.13
ENSMUST00000159163 N/A 0.114±0.00 0.023±0.00 N/A 0.419±0.31 0.117±0.00 N/A 54.087±0.00 N/A 0.142±0.00 N/A 0.112±0.08 0.097±0.01 N/A
ENSMUST00000161285 N/A N/A 0.006±0.00 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AJ CIL_0009AJ_0002 VISTA 10:20781770-21384133

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001758 ISS retinal dehydrogenase activity
GO:0005622 ISS intracellular
GO:0005737 IEA cytoplasm
GO:0042573 ISS retinoic acid metabolic process
GO:0042574 ISS retinal metabolic process
GO:0042904 IDA 9-cis-retinoic acid biosynthetic process
GO:0055114 IEA oxidation-reduction process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036776 aldh8a1 aldehyde dehydrogenase 8 family, member A1 protein_coding Danio_rerio
ENSG00000118514 ALDH8A1 aldehyde dehydrogenase 8 family, member A1 protein_coding Homo_sapiens

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