C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ferredoxin-fold anticodon binding domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037845 Fdxacb1 10090 + 9:50768236-50773348 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042391 Fdxacb1-001 50768236-50773348 protein_coding
  ENSMUST00000176145 Fdxacb1-005 50768251-50771591 nonsense_mediated_decay
  ENSMUST00000176335 Fdxacb1-003 50768445-50772643 protein_coding
  ENSMUST00000176619 Fdxacb1-002 50768238-50772669 retained_intron
  ENSMUST00000177384 Fdxacb1-004 50770062-50771537 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartLiverMusclePlacentaENSMUST00000042391ENSMUST00000176335
Transcript ID Bladder Heart Liver Muscle Placenta
ENSMUST00000042391 4.325±0.00 2.274±0.19 4.309±1.18 1.635±0.18 5.703±0.25
ENSMUST00000176335 N/A N/A N/A N/A 6.377±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TF CIL_0002TF_0002 CGP 9:50752758-50775520
CIL_0003WJ CIL_0003WJ_0002 CGP 9:50768236-50843542

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0000287 IEA magnesium ion binding
GO:0003674 ND molecular_function
GO:0004826 IEA phenylalanine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006432 IEA phenylalanyl-tRNA aminoacylation
GO:0008033 IEA tRNA processing
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000095750 FDXACB1 ferredoxin-fold anticodon binding domain containing 1 protein_coding Danio_rerio
ENSG00000255561 FDXACB1 ferredoxin-fold anticodon binding domain containing 1 protein_coding Homo_sapiens

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