C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 50
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038127 Ccdc50 10090 + 16:27388869-27452218 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039443 Ccdc50-002 27388980-27439669 protein_coding
  ENSMUST00000096127 Ccdc50-003 27388980-27446381 protein_coding
  ENSMUST00000100026 Ccdc50-001 27388869-27452218 protein_coding
  ENSMUST00000143823 Ccdc50-004 27389936-27438349 protein_coding
  ENSMUST00000149077 Ccdc50-005 27389968-27391091 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096127ENSMUST00000100026ENSMUST00000143823
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096127 N/A 12.080±3.81 N/A N/A N/A 6.432±0.22 N/A N/A 9.023±2.35 N/A N/A N/A 16.434±1.09 61.564±12.82
ENSMUST00000100026 12.720±5.17 12.919±6.75 14.829±1.29 13.743±7.17 11.783±6.13 7.086±1.36 2.468±1.39 8.017±3.11 6.027±2.67 8.154±5.33 3.960±1.08 15.078±6.40 9.674±4.87 2.388±0.95
ENSMUST00000143823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.105±28.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DS CIL_0000DS_0002 CGP 16:27353322-27452218

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0031625 IEA ubiquitin protein ligase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078514 CCDC50 (1 of 2) coiled-coil domain containing 50 protein_coding Danio_rerio
ENSDARG00000094493 CCDC50 (2 of 2) coiled-coil domain containing 50 protein_coding Danio_rerio
ENSG00000152492 CCDC50 coiled-coil domain containing 50 protein_coding Homo_sapiens

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