C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 50
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000152492 CCDC50 9606 + 3:191329077-191398670 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392455 CCDC50-001 191329077-191398670 protein_coding
  ENST00000392456 CCDC50-002 191329085-191392175 protein_coding
  ENST00000460064 CCDC50-003 191361103-191370281 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392455ENST00000392456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392455 9.412±0.00 12.942±0.00 1.189±0.00 4.055±1.01 7.960±1.51 3.387±1.78 3.257±1.16 3.672±1.22 4.747±2.07 4.590±1.34 1.011±0.76 6.413±2.79 3.342±0.78 4.289±1.14
ENST00000392456 22.605±0.00 N/A 3.655±0.00 N/A 7.943±4.28 12.338±5.71 5.430±3.66 8.361±2.64 9.415±6.36 11.750±8.39 8.397±0.00 7.656±4.47 9.568±2.31 16.638±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DK CIL_0000DK_0001 CGP 3:191199241-191330536
CIL_0000DS CIL_0000DS_0001 CGP 3:191267168-191398670

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0031625 IPI ubiquitin protein ligase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078514 CCDC50 (1 of 2) coiled-coil domain containing 50 protein_coding Danio_rerio
ENSDARG00000094493 CCDC50 (2 of 2) coiled-coil domain containing 50 protein_coding Danio_rerio
ENSMUSG00000038127 Ccdc50 coiled-coil domain containing 50 protein_coding Mus_musculus

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