C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: non-SMC condensin I complex, subunit D2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038252 Ncapd2 10090 - 6:125168007-125191701 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043848 Ncapd2-001 125168007-125191701 protein_coding
  ENSMUST00000185624 Ncapd2-009 125171052-125173909 retained_intron
  ENSMUST00000186210 Ncapd2-004 125184520-125186595 retained_intron
  ENSMUST00000186561 Ncapd2-005 125175849-125177390 retained_intron
  ENSMUST00000186667 Ncapd2-007 125171832-125173891 retained_intron
  ENSMUST00000188119 Ncapd2-013 125168007-125169284 retained_intron
  ENSMUST00000188306 Ncapd2-010 125177214-125179412 retained_intron
  ENSMUST00000188410 Ncapd2-011 125170941-125171806 retained_intron
  ENSMUST00000188665 Ncapd2-012 125169839-125171090 retained_intron
  ENSMUST00000188762 Ncapd2-002 125184296-125191603 nonsense_mediated_decay
  ENSMUST00000189706 Ncapd2-006 125173360-125174529 retained_intron
  ENSMUST00000189959 Ncapd2-003 125185793-125191490 protein_coding
  ENSMUST00000191080 Ncapd2-008 125173455-125176738 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043848ENSMUST00000188119ENSMUST00000188410
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043848 5.911±2.62 2.285±0.40 4.177±0.07 23.784±2.51 4.340±1.33 6.978±1.77 3.798±1.03 2.009±0.36 18.833±24.05 3.133±0.76 1.728±0.59 10.753±5.05 12.515±6.39 16.975±4.03
ENSMUST00000188119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.808±5.97 N/A
ENSMUST00000188410 N/A 7.997±3.07 N/A N/A 8.415±0.24 17.215±2.41 N/A 4.841±0.00 1.362±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 IEA nuclear chromosome
GO:0000793 IDA condensed chromosome
GO:0000796 IEA condensin complex
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0007076 IEA mitotic chromosome condensation
GO:0016020 IEA membrane
GO:0045120 IDA pronucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005058 ncapd2 non-SMC condensin I complex, subunit D2 protein_coding Danio_rerio
ENSG00000010292 NCAPD2 non-SMC condensin I complex, subunit D2 protein_coding Homo_sapiens

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